LOCUS HSU53874 3270 bp DNA linear HUM 03-JUN-1997
DEFINITION Human blue cone pigment gene, complete cds.
ACCESSION U53874
VERSION U53874.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3270)
AUTHORS Shimmin,L.C., Mai,P. and Li,W.H.
TITLE Sequences and evolution of human and squirrel monkey blue opsin
genes
JOURNAL J. Mol. Evol. 44 (4), 378-382 (1997)
PUBMED 9089077
REFERENCE 2 (bases 1 to 3270)
AUTHORS Shimmin,L.C.
TITLE Direct Submission
JOURNAL Submitted (09-APR-1996) L.C. Shimmin, Human Genetics Center, School
of Public Health, University of Texas Houston Health Science
Center, 6901 Bertner, Room S250, Houston, TX 77030, USA
FEATURES Location/Qualifiers
source 1..3270
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
/chromosome="7"
/map="7q31-35"
/dev_stage="adult"
mRNA join(<11..362,647..815,1137..1302,1910..2149,3139..>3258)
CDS join(11..362,647..815,1137..1302,1910..2149,3139..3258)
/note="G-coupled-protein receptor family; photovisual
pigment"
/codon_start=1
/product="blue cone pigment"
/protein_id="AAC51334.1"
/translation="MRKMSEEEFYLFKNISSVGPWDGPQYHIAPVWAFYLQAAFMGTV
FLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFSVFPVFVASCNGYFVF
GRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGNFRFSSKHALTVVLATWTI
GIGVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICF
SYTQLLRALKAVAAQQQESATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVNNR
NHGLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVCGKAMTDESDTCSSQK
TEVSTVSSTQVGPN"
exon <11..362
/number=1
exon 647..815
/number=2
exon 1137..1302
/number=3
repeat_region 1541..1812
/rpt_family="Alu"
/rpt_type=dispersed
exon 1910..2149
/number=4
repeat_region 2322..2497
/rpt_family="MER13"
/rpt_type=dispersed
exon 3139..>3258
/number=5
BASE COUNT 864 a 791 c 807 g 808 t
ORIGIN
1 tggggcatcc atgagaaaaa tgtcggagga agagttttat ctgttcaaaa atatctcttc
61 agtggggccg tgggatgggc ctcagtacca cattgcccct gtctgggcct tctacctcca
121 ggcagctttc atgggcactg tcttccttat agggttccca ctcaatgcca tggtgctggt
181 ggccacactg cgctacaaaa agttgcggca gcccctcaac tacattctgg tcaacgtgtc
241 cttcggaggc ttcctcctct gcatcttctc tgtcttccct gtcttcgtcg ccagctgtaa
301 cggatacttc gtcttcggtc gccatgtttg tgctttggag ggcttcctgg gcactgtagc
361 aggtactgca ggggaaaaag gggttagggg aaggcaaagg ttgctactcc gctggagggg
421 gttcctaaag aggagtctgg gggaaatgag tctggtgctt tttaaaatac tggggtacaa
481 agcaacccag actagaagtt tggctaaaat aggatgtttg agtcttcact ccaaatgtca
541 gtccagccct gtctctctgt gcttcctccc acccgatctg tttgccactc tgccagccag
601 gctggtgggg ctctgtctag cccattattc tcacatttca ccacaggtct ggttacagga
661 tggtcactgg ccttcctggc ctttgagcgc tacattgtca tctgtaagcc cttcggcaac
721 ttccgcttca gctccaagca tgcactgacg gtggtcctgg ctacctggac cattggtatt
781 ggcgtctcca tcccaccctt ctttggctgg agccggtgag agtgcagggc agtggtgctg
841 agttaactag gagctcaggt tgatgtgggt ggaaagagag cttgggtata actatttagt
901 ctttgacctc tacttttaaa gagttgcaat atgaggggaa gggcagtggg agacaagtgc
961 taacgtttac tctgcagttg gaattgctgt agcttctccc agtcaggaca gaaaaccccc
1021 ctgcttgaag ccttagggca ttccgtgggt tctaagtgga gaacacaatc caggcatctc
1081 agctcccacc gcactcttgt ggagagtcca gtgagcaagt gtttggtcct ttgcaggttc
1141 atccctgagg gcctgcagtg ttcctgtggc cctgactggt acaccgtggg caccaaatac
1201 cgcagcgagt cctatacgtg gttcctcttc atcttctgct tcattgtgcc tctctccctc
1261 atctgcttct cctacactca gctgctgagg gccctgaaag ctgtgagtgg catttgatag
1321 tcagggaaga aggggttcgg ggctccacat gagaaggaag agtgctctga aacataagat
1381 gcctggaaat gtccatagcc agagagggta tctaaaagca gcaaaggaag taggaggagg
1441 gagaatgatg gagatccaaa ggaacaggcc aggagatggg acagaaaaga ggcaatcaga
1501 gtggatgccc cctcccccat cccacagaaa agcatccaga gaccgggcgc agtggctcac
1561 gcctataatc ccagcacttt gggaggccga agcagacgga tcacctgagg tcaatagttc
1621 cagaccagcc tggcctacat ggcaaaatgc taaaatgcga aaattagctg ggcatggtgg
1681 tgtgtgcttg taaccccagc tactcaggag gctgagacaa aagaatcact tgaacccggg
1741 aggtggaggt tcagtgagcc gagactgcac cactgcaact ccagcctggg caacagagcg
1801 agactcggtc tcaaaaaaaa aattaaaaat taaaaattaa aaaaaaaaaa aaaagcatcc
1861 agagggacag gaaaaagaga gatgtgatgc tttccgtgct ccaccccagg ttgcagctca
1921 gcagcaggag tcagctacga cccagaaggc tgaacgggag gtgagccgca tggtggttgt
1981 gatggtagga tccttctgtg tctgctacgt gccctacgcg gccttcgcca tgtacatggt
2041 caacaaccgt aaccatgggc tggacttacg gcttgtcacc attccttcat tcttctccaa
2101 gagtgcttgc atctacaatc ccatcatcta ctgcttcatg aataagcagg taaagctctt
2161 tattcacatt cctatggtcc agaagaccct ggttcttttc tcaccattga cttttaactc
2221 agagcaccct ggactctacc caggtttcta gtagacgagg gaagccacaa aacccccgag
2281 taggttggga agcctttggt aagcacaggg aggaaggcac ggttatcaag acgagaaaat
2341 agaaccccgg aggaaagaac ttgagtcagg aaaatgaagt tgctccaaag aacaggatga
2401 atgaaagcat tttattgaaa aactcgtgca gcaaaccacc atggcacacg tttacctatg
2461 taacaaacct gcacatcctg cacatgtatc ctggaactta aataaaatta aaaaaataaa
2521 aataaaaact cagattcctc tcaattttca gtccttgcat ttaataattt cttaatcatt
2581 tcccttccaa cttttagcct gcacgagcat gtgtgaagca cagaaatcat accacatgca
2641 aaaatctcta aaatatctta tcatctgaag gtactggggg atttcctatc ccatctgaaa
2701 tccgagctaa taaacaccaa accctaagtg gcaaaaaccc tactttcaga tggtattgtt
2761 tcctcaatcc cagaggtaga ctcaaaacta atttgaaacc tccctggata gaagagaatt
2821 ggcagtcctt tccagctggg agcacctgct agtaatggag gggcctctgc tgacagtgct
2881 tttatgaagc aggatggttt gtgaatttac caacagtgag gtctcagact tgaccagttt
2941 aggattaccg tagacccagg agtagttcta gactggaatc tagatagttt tcaggatggg
3001 gaagatagat tcaaaaccac ctaagggcat tctgggtaca aagcattgtg caaggctttg
3061 gtgatacaga gaataaggtc ttttttccca tacttcctca tctgccaagg ttatctccaa
3121 ttgtaccttt ctctccagtt ccaagcttgc atcatgaaga tggtgtgtgg gaaggccatg
3181 acagatgaat ccgacacatg cagctcccag aaaacagaag tttctactgt ctcgtctacc
3241 caagttggcc ccaactgagg acccaatatt
//