LOCUS HSU40580 4467 bp DNA linear HUM 23-OCT-2007
DEFINITION Human U22 snoRNA host gene (UHG) gene, complete sequence.
ACCESSION U40580
VERSION U40580.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4467)
AUTHORS Tycowski,K.T., Shu,M.D. and Steitz,J.A.
TITLE A mammalian gene with introns instead of exons generating stable
RNA products
JOURNAL Nature 379 (6564), 464-466 (1996)
PUBMED 8559254
REFERENCE 2 (bases 1 to 4467)
AUTHORS Tycowski,K.T., Shu,M.-D. and Steitz,J.A.
TITLE Direct Submission
JOURNAL Submitted (13-NOV-1995) Kazimierz T. Tycowski, Molecular Biophysics
& Biochemistry, Yale University, 295 Congress Ave., New Haven, CT
06536, USA
FEATURES Location/Qualifiers
source 1..4467
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
gene 466..4391
/gene="UHG"
regulatory 466..477
/regulatory_class="TATA_box"
/gene="UHG"
misc_RNA join(496..516,915..957,1165..1248,1443..1493,1830..1862,
2319..2365,2550..2582,2792..2830,3266..3306,3541..3569,
3700..4390)
/gene="UHG"
exon 496..516
/gene="UHG"
/number=1
intron 517..914
/gene="UHG"
/number=1
ncRNA 750..816
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U25 snoRNA"
exon 915..957
/gene="UHG"
/number=2
intron 958..1164
/gene="UHG"
/number=2
ncRNA 1015..1089
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U26 snoRNA"
exon 1165..1248
/gene="UHG"
/number=3
intron 1249..1442
/gene="UHG"
/number=3
ncRNA 1298..1369
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U27 snoRNA"
exon 1443..1493
/gene="UHG"
/number=4
intron 1494..1829
/gene="UHG"
/number=4
ncRNA 1686..1760
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U28 snoRNA"
exon 1830..1862
/gene="UHG"
/number=5
intron 1863..2318
/gene="UHG"
/number=5
misc_feature 2098..2222
/gene="UHG"
/note="U22 snoRNA pseudogene"
exon 2319..2365
/gene="UHG"
/number=6
intron 2366..2549
/gene="UHG"
/number=6
ncRNA 2415..2479
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U29 snoRNA"
exon 2550..2582
/gene="UHG"
/number=7
intron 2583..2791
/gene="UHG"
/number=7
ncRNA 2651..2720
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U30 snoRNA"
exon 2792..2830
/gene="UHG"
/number=8
intron 2831..3265
/gene="UHG"
/number=8
ncRNA 2989..3056
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U31 snoRNA"
exon 3266..3306
/gene="UHG"
/number=9
intron 3307..3540
/gene="UHG"
/number=9
ncRNA 3346..3470
/ncRNA_class="snoRNA"
/gene="UHG"
/product="U22 snoRNA"
exon 3541..3569
/gene="UHG"
/number=10
intron 3570..3699
/gene="UHG"
/number=10
exon 3700..4390
/gene="UHG"
/number=11
mobile_element 3955..4065
/mobile_element_type="SINE:Alu"
regulatory 4373..4378
/regulatory_class="polyA_signal_sequence"
/gene="UHG"
polyA_site 4390
/gene="UHG"
BASE COUNT 1106 a 927 c 1041 g 1392 t
ORIGIN
1 gagtcgtccc ccgcgctgag accctggaca ccagcctccg aatgtgagcc aggcaactgg
61 cgcggaatcg acacgacggc gatcgaggct tcaggagnct gtagctccat ggaggcggat
121 cctgcacaca ggtttggggt gtgtgggcaa ggggcagctc agaacagggt tagagggtag
181 gcagtcgtga ccgtcagtcc aggatcgccg tgaggcagtg atctcaccgc tcctgccaca
241 tgcactgggt gagaaaacca agccgcaatg cggtcggtga gccagcacgc tcccgtagga
301 cgcatgcgcg cctttttcgc gccgcaagtt caggtggcgc tttgtctacg ccctccttcc
361 ctggaactct ctacccacaa ctccccgggg tcgcatgcgg tcaacgtatg cgcgtgcgct
421 cgccgtagcc ccgcccccaa atcccgtggg cccctgccgg catggtattt aatcgtctcc
481 ccggggagat tcgttctcat ttttctactg ctcgtggtaa gtggcttcgt ggtctttata
541 gctgttactc ttttgtactt tgtctttttc ttttattttc ttttgagcga ttgtgcgaac
601 atagcatagc acgcactatg ccttctgtgt tgtagctgcc tggccagggc gactggcgga
661 taaggtcttg tgcgtggcct cgaggcttaa aagtagcagt ggggctttgt gaaggacaaa
721 atggcgatgg cgggccgtgt aggtccccct tcctatgatg aggacctttt cacagacctg
781 tactgagctc cgtgaggata aataactctg aggagatggg ccctgcaagc ctcttgctta
841 gccgtctgtt cagaaaatag cgttttcgaa atgccctgag ttgacctaat gtcttattgg
901 gctcctgtct gcaggattta cgcgcacgtt ggaaccgaag agagctctgt tgttgcagta
961 agttcttacg gccatttctt aatctctgct ctttcgttga gtgtgtggaa gttgctacgg
1021 ggatgatttt acgaactgaa ctctctcttt ctgatggatt agtggagaaa acagaaaatt
1081 ctgagtagca ctgtactgta cgcaacaaat gtcagggccc tattgatttg tctgaggtgt
1141 tagtgaaggg tgttattttt tcagatgttc agcccacaag agcttactgg tgaaggaatg
1201 ggacaagacc catctttatg caaagccagc gttacagtaa tgttccaggt aggtgtacat
1261 ggtttatgct cttacagagg agaccttgta gataaccact ccatgatgaa cacaaaatga
1321 caagcatatg gctgaacttt caagtgatgt catcttacta ctgagaagtg agagagaggt
1381 cttaaggggt ctttgaatga ctatttttag gtacataaaa tgctttcctc tgttgtctac
1441 agcatctcat aatctatcct ggggaattca gctgcctccc agggtgaata caggtaatta
1501 tccaaattgg tgtatgtcat ctttgtaaat gttcaagaaa acaagtggcc ggcggaacaa
1561 tgttttttgg cgccttccat cttgttcctc ttgaaatgat tttctgggga gggagatcgc
1621 aacccggtac tacagttctt gtaagggtgt gctgttaccc tcatccatat atcgatcacg
1681 ttactgtcag atgatttgaa ttgataagct gatgttctgt gaggtacaaa agttaatagc
1741 atgttagagt tctgatggca gttgttgttt atgaataagc ttcattccat cctaatacct
1801 taaaataact aatttgcttt cctttccagg tattcctgat gacagtctgc ctctatctta
1861 cagtaagttt ggtttttcga attctatggg cctattctct aatagataac ttagccattt
1921 tgatatttgt taccaaagcc tgcttaaccc ataaagtttt ctggttcctc ttgttctctg
1981 tagtgatgtt tctagataga tgcccactga tatatgcccc ttttttctca gatagatgcc
2041 cactgatctg cccagggtca gacgaatgct tgtcagttgt agctttccag gattctgctc
2101 caatgaggag gaaacatcct gccttacccc tgttttagcc tgggaaccag taattgtgaa
2161 ctcaccaggg ttaacatgaa gagggcatga gagcttattc cataaggaat tgtctgagac
2221 atttggttac cttttcttag tttgtccatt agcaaccgta actaaaatag ttttggctgt
2281 ttgggataat tagctaattg aatgattttt tgattcagga gcagcttgtt gctatatacc
2341 attgaaaagc cttcagagct gagaggttag ttgatatttt ttgttcctta cagcttatgc
2401 caccaagtag gcagtttcta tgatgaatca aactagctca ctatgaccga cagtgaaaat
2461 acatgaacac ctgagaaact ggagaacgca gggagtgggg ggtaaccatg tctgaggaat
2521 ctttcaccca cagctttgtt tttctctagg tactactaac caataacctg cttggctcaa
2581 aggtgagtaa tttcacggta ttcaatgcac tcagtatata gggtaggaaa aagtgccttt
2641 ttaggcctgt gtttgtgatg acttacatgg aatctcgttc ggctgatgac ttgctgttga
2701 gactctgaaa tctgattttc tgagaatgat gggtgggaac aacataatgc gggatatgag
2761 aagcactact gacttggtct tcctctttca gggccagcac cttctctcta aagcccaaga
2821 ggagtttgag gtaaatggct ttgcaatagt taccatcaat ggctgctata taaaattttc
2881 tgtgattttt gtgtgtgata gcactgtggt ctgggtgaat gtacacagac ataactggct
2941 taacccaaag tctttgatct cctgaaccac cagtgatgaa ttgctgctca ccagtgatga
3001 gttgaatacc gccccagtct gatcaatgtg tgactgaaag gtattttctg agctgtgagc
3061 ctgccttcca gtgacatgtt ctaaaaattg caagttattt gaggagcttt acagccaata
3121 ggaagttctt gggctaagta gtgtttccta taaaatgtgc cctgaaactt ctttctgcca
3181 agcaatagat acaattgaga gattgtaaaa tgtgacatag aatgaaagtc tctcaagact
3241 acatttttct ttcttgattt tgcaggaaaa ctaggtgtct gtgttcactc caggctgaag
3301 ttacaggtga gtaaacctaa atgtaaggtg gactatgcta aaaattccca atgaagaaac
3361 tttcacatgt cttactctct gtcctagtcc cagagcctgt aaaggtgaac cactgggact
3421 ggctggggga gaagaggaag atttgttcca gaaggaactg tctgagggat gataaagatt
3481 tctatacaga gaaagggagt aatcatcact tgttgaaaac attggtttta ttttttccag
3541 gtctgagcaa ataaggtgta taaaaaatgg taggtatctg tttaaatatt taactgattt
3601 tataatagca accttttgct cctaggttac atagtgttaa atattgtgtt catttgtatt
3661 ttccaatcca ataagaactt ttttttttta cctctgcagg aatctgtctt ggaggacatc
3721 agaaggtgaa ttttccaagt tcttggacaa cctagctgtt gaaaagcttt ctgggtttgg
3781 ggggtatttc agatgtacct taaagtgtta gcagacacag attaagacac tgggagccaa
3841 tgaaacagca gttgagggtt tgctgtgtat cacatttctg tattttatca cccccttcct
3901 gcaacattat ttatctggaa tctacctgcc cttttgtttt ttagatacaa gggcttggtt
3961 ttgttaccca ggctggtttc aaggccatag ctttaagaga tcctctcacc acagatttcc
4021 aaagtgctgg gattgcaggt gtgattcatg gcacccagac tttgctgcct ttcttacatg
4081 atccaggccc agaacccaaa ctcaggcact gtatagatga ccactttcgt aaactactga
4141 cctagcttgt tgccaattgt tgattgaact tcccataact ccacttcgtg tctgttcctc
4201 tgtatacagc caccttctgt tcccgtcatg agcctttagg tctccatttg catattgcaa
4261 atactatgtt ccatgtaggt agctcattca gggccttgct cttcacttca aaaaaggttc
4321 ccttgaggac tggctgtcaa tttgtgttgc tgtgttggtt gttgatgaaa ataataaaat
4381 gattgattac atagtcctgt ttactttttt tgtgtgtatg tgtctcttag catcagtgtg
4441 taaatttcca tgggaaactg gctttcc
//