LOCUS       HSU07820                3335 bp    mRNA    linear   HUM 06-JUN-1995
DEFINITION  Human contactin 2 precursor (CNTN1) mRNA, complete cds.
ACCESSION   U07820
VERSION     U07820.1
KEYWORDS    cell adhesion molecule; immunoglobulin gene family; nervous system.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3335)
  AUTHORS   Berglund,E.O. and Ranscht,B.
  TITLE     Molecular cloning and in situ localization of the human contactin
            gene (CNTN1) on chromosome 12q11-q12
  JOURNAL   Genomics 21 (3), 571-582 (1994)
   PUBMED   7959734
REFERENCE   2  (bases 1 to 3335)
  AUTHORS   Berglund,E.O.
  TITLE     Human Contactin (Gp135) - Isolation, Molecular Cloning and Gene
            Localization of a New Brain Glycoprotein
  JOURNAL   Thesis (1993) Dept. of Medical Chemistry, Umea University, Sweden,
            and Neurobiology, La Jolla Cancer Research Foundation
REFERENCE   3  (bases 1 to 3335)
  AUTHORS   Berglund,E.O. and Ranscht,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-1994) Erik O. Berglund and Barbara Ranscht, La
            Jolla Cancer Research Foundation, 10901 North Torrey Pines Road, La
            Jolla, CA 92037, USA
FEATURES             Location/Qualifiers
     source          1..3335
                     /db_xref="H-InvDB:HIT000217805"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="12"
                     /map="12q11-q12"
                     /clone="clone 11A1"
                     /tissue_type="brain"
                     /dev_stage="fetus"
     gene            1..3335
                     /gene="CNTN1"
     misc_feature    1..7
                     /gene="CNTN1"
                     /note="EcoRI-linker"
     5'UTR           8..81
                     /gene="CNTN1"
     CDS             82..3105
                     /gene="CNTN1"
                     /function="immunoglobulin-like cell adhesion molecule"
                     /codon_start=1
                     /product="h-contactin 2 precursor"
                     /protein_id="AAA67921.1"
                     /translation="MKMWLLVSHLVIISITTCLAVSEEDKGFGPIFEEQPINTIYPEE
                     SLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYY
                     CLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYR
                     WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL
                     IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE
                     ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIG
                     SDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENTYGAIYAN
                     AELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRI
                     LIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVG
                     ENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKH
                     AGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPIS
                     KYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVVATNTLGRGEPS
                     IPSNRIKTDGAAPNVAPSDVGGGGGRNRELTITWAPLSREYHYGNNFGYIVAFKPFDG
                     EEWKKVTVTNPDTGRYVHKDETMSPSTAFQVKVKAFNNKGDGPYSLVAVINSAQDAPS
                     EAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSAR
                     LENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAPPSQPPRIISSVRSGSRYIITW
                     DHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKHSIEVPIPRDGEYVVEVRAHSDGG
                     DGVVSQVKISGAPTLSPSLLGLLLPAFGILVYLEF"
     sig_peptide     82..141
                     /gene="CNTN1"
     mat_peptide     142..3027
                     /gene="CNTN1"
                     /product="h-contactin 2"
                     /function="immunoglobulin-like cell adhesion molecule"
     misc_feature    241..390
                     /gene="CNTN1"
                     /note="encodes disulfide loop of immunoglobulin type
                     C2-like domain; Ig-domain"
                     /citation=[1]
                     /citation=[2]
     misc_feature    520..681
                     /gene="CNTN1"
                     /note="encodes disulfide loop of immunoglobulin type
                     C2-like domain; Ig-domain"
                     /citation=[1]
                     /citation=[2]
     misc_feature    670..672
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    820..822
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    835..978
                     /gene="CNTN1"
                     /note="encodes disulfide loop of immunoglobulin type
                     C2-like domain; Ig-domain"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1060..1062
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1102..1221
                     /gene="CNTN1"
                     /note="encodes disulfide loop of immunoglobulin type
                     C2-like domain; Ig-domain"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1354..1500
                     /gene="CNTN1"
                     /note="encodes disulfide loop of immunoglobulin type
                     C2-like domain; Ig-domain"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1417..1419
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1465..1467
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1528..1530
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1609..1611
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1624..1797
                     /gene="CNTN1"
                     /note="encodes disulfide loop of immunoglobulin type
                     C2-like domain; Ig-domain"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1819..1821
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1918..2079
                     /gene="CNTN1"
                     /note="encodes fibronectin type III-like repeat;
                     FNIII-repeat"
                     /citation=[1]
                     /citation=[2]
     misc_feature    1936..1938
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    2227..2388
                     /gene="CNTN1"
                     /note="encodes fibronectin type III-like repeat;
                     FNIII-repeat"
                     /citation=[1]
                     /citation=[2]
     misc_feature    2533..2679
                     /gene="CNTN1"
                     /note="encodes fibronectin type III-like repeat;
                     FNIII-repeat"
                     /citation=[1]
                     /citation=[2]
     misc_feature    2821..2963
                     /gene="CNTN1"
                     /note="encodes fibronectin type III-like repeat;
                     FNIII-repeat"
                     /citation=[1]
                     /citation=[2]
     misc_feature    2845..2847
                     /gene="CNTN1"
                     /note="codon for potential Asn-linked glycosylation;
                     Asn-glycosyl"
                     /citation=[1]
                     /citation=[2]
     misc_feature    3025..3027
                     /gene="CNTN1"
                     /note="codon for potential GPI-linkage; GPI-anchor"
                     /citation=[1]
                     /citation=[2]
     misc_feature    3052..3102
                     /gene="CNTN1"
                     /note="encodes COOH-terminal hydrophobic region;
                     C-termPep"
                     /citation=[1]
                     /citation=[2]
     3'UTR           3106..3335
                     /gene="CNTN1"
     regulatory      3208..3213
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CNTN1"
     regulatory      3292..3297
                     /regulatory_class="polyA_signal_sequence"
                     /gene="CNTN1"
BASE COUNT         1037 a          704 c          736 g          858 t
ORIGIN      
        1 gaattccgtt taaaattatc caactgccat agagctaaat tcttttttgg aaaattgaac
       61 cgaacttcta ctgaatacaa gatgaaaatg tggttgctgg tcagtcatct tgtgataata
      121 tctattacta cctgtttagc agtttctgag gaagacaaag gatttggacc aatttttgaa
      181 gagcagccaa tcaataccat ttatccagag gaatcactgg aaggaaaagt ctcactcaac
      241 tgtagggcac gagccagccc tttcccggtt tacaaatgga gaatgaataa tggggacgtt
      301 gatctcacaa gtgatcgata cagtatggta ggaggaaacc ttgttatcaa caaccctgac
      361 aaacagaaag atgctggaat atactactgt ttagcatcta ataactacgg gatggtcaga
      421 agcactgaag caaccctgag ctttggatat cttgatcctt tcccacctga ggaacgtcct
      481 gaggtcagag taaaagaagg gaaaggaatg gtgcttctct gtgacccccc ataccatttt
      541 ccagatgatc ttagctatcg ctggcttcta aatgaatttc ctgtatttat cacaatggat
      601 aaacggcgat ttgtgtctca gacaaatggc aatctctaca ttgcaaatgt tgaggcttcc
      661 gacaaaggca attattcctg ctttgtttcc agtccttcta ttacaaagag cgtgttcagc
      721 aaattcatcc cactcattcc aatacctgaa cgaacaacaa aaccatatcc tgctgatatt
      781 gtagttcagt tcaaggatgt atatgcattg atgggccaaa atgtgacctt agaatgtttt
      841 gcacttggaa atcctgttcc ggatatccga tggcggaagg ttctagaacc aatgccaagc
      901 actgctgaga ttagcacctc tggggctgtt cttaagatct tcaatattca gctagaagat
      961 gaaggcatct atgaatgtga ggctgagaac attagaggaa aggataaaca tcaagcaaga
     1021 atttatgttc aagcattccc tgagtgggta gaacacatca atgacacaga ggtggacata
     1081 ggcagtgatc tctactggcc ttgtgtggcc acaggaaagc ccatccctac aatccgatgg
     1141 ttgaaaaatg gatatgcgta tcataaaggg gaattaagac tgtatgatgt gacttttgaa
     1201 aatgccggaa tgtatcagtg catagctgaa aacacatatg gagccattta tgcaaatgct
     1261 gagttgaaga tcttggcgtt ggctccaact tttgaaatga atcctatgaa gaaaaagatc
     1321 ctggctgcta aaggtggaag ggtgataatt gaatgcaaac ctaaagctgc accgaaacca
     1381 aagttttcat ggagtaaagg gacagagtgg cttgtcaata gcagcagaat actcatttgg
     1441 gaagatggta gcttggaaat caataacatt acaaggaatg atggaggtat ctatacatgc
     1501 tttgcagaaa ataacagagg gaaagctaat agcactggaa cccttgttat cacagatcct
     1561 acgcgaatta tattggcccc aattaatgcc gatatcacag ttggagaaaa cgccaccatg
     1621 cagtgtgctg cgtcctttga tcctgccttg gatctcacat ttgtttggtc cttcaatggc
     1681 tatgtgatcg attttaacaa agagaatatt cactaccaga ggaattttat gctggattcc
     1741 aatggggaat tactaatccg aaatgcgcag ctgaaacatg ctggaagata cacatgcact
     1801 gcccagacaa ttgtggacaa ttcttcagct tcagctgacc ttgtagtgag aggccctcca
     1861 ggccctccag gtggtctgag aatagaagac attagagcca cttctgtggc acttacttgg
     1921 agccgtggtt cagacaatca tagtcctatt tctaaataca ctatccagac caagactatt
     1981 ctttcagatg actggaaaga tgcaaagaca gatcccccaa ttattgaagg aaatatggag
     2041 gcagcaagag cagtggactt aatcccatgg atggagtatg aattccgcgt ggtagcaacc
     2101 aatacactgg gtagaggaga gcccagtata ccatctaaca gaattaaaac agacggtgct
     2161 gcaccaaatg tggctccttc agatgtagga ggtggaggtg gaagaaacag agagctgacc
     2221 ataacatggg cgcctttgtc aagagaatac cactatggca acaattttgg ttacatagtg
     2281 gcatttaagc catttgatgg agaagaatgg aaaaaagtca cagttactaa tcctgatact
     2341 ggccgatatg tccataaaga tgaaaccatg agcccttcca ctgcatttca agttaaagtc
     2401 aaggccttca acaacaaagg agatggacct tacagcctag tagcagtcat taattcagca
     2461 caagacgctc ccagtgaagc cccaacagaa gtaggtgtaa aagtcttatc atcttctgag
     2521 atatctgttc attgggaaca tgttttagaa aaaatagtgg aaagctatca gattcggtat
     2581 tgggctgccc atgacaaaga agaagctgca aacagagttc aagtcaccag ccaagagtac
     2641 tcggccaggc tcgagaacct tctgccagac acccagtatt ttatagaagt cggggcctgc
     2701 aatagtgcag ggtgtggacc tccaagtgac atgattgagg ctttcaccaa gaaagcacct
     2761 cctagccagc ctccaaggat catcagttca gtaaggtctg gttcacgcta tataatcacc
     2821 tgggatcatg tcgttgcact atcaaatgaa tctacagtga cgggatataa ggtactctac
     2881 agacctgatg gccagcatga tggcaagctg tattcaactc acaaacactc catagaagtc
     2941 ccaatcccca gagatggaga atacgttgtg gaggttcgcg cgcacagtga tggaggagat
     3001 ggagtggtgt ctcaagtcaa aatttcaggt gcacccaccc tatccccaag tcttctcggc
     3061 ttactgctgc ctgcctttgg catccttgtc tacttggaat tctgaatgtg ttgtgacagc
     3121 tgctgttccc atcccagctc agaagacacc cttcaaccct gggatgacca caattccttc
     3181 caatttctgc ggctccatcc taagccaaat aaattatact ttaacaaact attcaactga
     3241 tttacaacac acatgatgac tgaggcattc aggaacccct tcatccaaaa gaataaactt
     3301 ttaaatggat ataaatgatt tttaactcgt tccaa
//