LOCUS HSU07820 3335 bp mRNA linear HUM 06-JUN-1995 DEFINITION Human contactin 2 precursor (CNTN1) mRNA, complete cds. ACCESSION U07820 VERSION U07820.1 KEYWORDS cell adhesion molecule; immunoglobulin gene family; nervous system. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3335) AUTHORS Berglund,E.O. and Ranscht,B. TITLE Molecular cloning and in situ localization of the human contactin gene (CNTN1) on chromosome 12q11-q12 JOURNAL Genomics 21 (3), 571-582 (1994) PUBMED 7959734 REFERENCE 2 (bases 1 to 3335) AUTHORS Berglund,E.O. TITLE Human Contactin (Gp135) - Isolation, Molecular Cloning and Gene Localization of a New Brain Glycoprotein JOURNAL Thesis (1993) Dept. of Medical Chemistry, Umea University, Sweden, and Neurobiology, La Jolla Cancer Research Foundation REFERENCE 3 (bases 1 to 3335) AUTHORS Berglund,E.O. and Ranscht,B. TITLE Direct Submission JOURNAL Submitted (17-MAR-1994) Erik O. Berglund and Barbara Ranscht, La Jolla Cancer Research Foundation, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA FEATURES Location/Qualifiers source 1..3335 /db_xref="H-InvDB:HIT000217805" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="12" /map="12q11-q12" /clone="clone 11A1" /tissue_type="brain" /dev_stage="fetus" gene 1..3335 /gene="CNTN1" misc_feature 1..7 /gene="CNTN1" /note="EcoRI-linker" 5'UTR 8..81 /gene="CNTN1" CDS 82..3105 /gene="CNTN1" /function="immunoglobulin-like cell adhesion molecule" /codon_start=1 /product="h-contactin 2 precursor" /protein_id="AAA67921.1" /translation="MKMWLLVSHLVIISITTCLAVSEEDKGFGPIFEEQPINTIYPEE SLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYY CLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYR WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE ISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIG SDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENTYGAIYAN AELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRI LIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVG ENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKH AGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPIS KYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVVATNTLGRGEPS IPSNRIKTDGAAPNVAPSDVGGGGGRNRELTITWAPLSREYHYGNNFGYIVAFKPFDG EEWKKVTVTNPDTGRYVHKDETMSPSTAFQVKVKAFNNKGDGPYSLVAVINSAQDAPS EAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSAR LENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAPPSQPPRIISSVRSGSRYIITW DHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKHSIEVPIPRDGEYVVEVRAHSDGG DGVVSQVKISGAPTLSPSLLGLLLPAFGILVYLEF" sig_peptide 82..141 /gene="CNTN1" mat_peptide 142..3027 /gene="CNTN1" /product="h-contactin 2" /function="immunoglobulin-like cell adhesion molecule" misc_feature 241..390 /gene="CNTN1" /note="encodes disulfide loop of immunoglobulin type C2-like domain; Ig-domain" /citation=[1] /citation=[2] misc_feature 520..681 /gene="CNTN1" /note="encodes disulfide loop of immunoglobulin type C2-like domain; Ig-domain" /citation=[1] /citation=[2] misc_feature 670..672 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 820..822 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 835..978 /gene="CNTN1" /note="encodes disulfide loop of immunoglobulin type C2-like domain; Ig-domain" /citation=[1] /citation=[2] misc_feature 1060..1062 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 1102..1221 /gene="CNTN1" /note="encodes disulfide loop of immunoglobulin type C2-like domain; Ig-domain" /citation=[1] /citation=[2] misc_feature 1354..1500 /gene="CNTN1" /note="encodes disulfide loop of immunoglobulin type C2-like domain; Ig-domain" /citation=[1] /citation=[2] misc_feature 1417..1419 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 1465..1467 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 1528..1530 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 1609..1611 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 1624..1797 /gene="CNTN1" /note="encodes disulfide loop of immunoglobulin type C2-like domain; Ig-domain" /citation=[1] /citation=[2] misc_feature 1819..1821 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation" /citation=[1] /citation=[2] misc_feature 1918..2079 /gene="CNTN1" /note="encodes fibronectin type III-like repeat; FNIII-repeat" /citation=[1] /citation=[2] misc_feature 1936..1938 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 2227..2388 /gene="CNTN1" /note="encodes fibronectin type III-like repeat; FNIII-repeat" /citation=[1] /citation=[2] misc_feature 2533..2679 /gene="CNTN1" /note="encodes fibronectin type III-like repeat; FNIII-repeat" /citation=[1] /citation=[2] misc_feature 2821..2963 /gene="CNTN1" /note="encodes fibronectin type III-like repeat; FNIII-repeat" /citation=[1] /citation=[2] misc_feature 2845..2847 /gene="CNTN1" /note="codon for potential Asn-linked glycosylation; Asn-glycosyl" /citation=[1] /citation=[2] misc_feature 3025..3027 /gene="CNTN1" /note="codon for potential GPI-linkage; GPI-anchor" /citation=[1] /citation=[2] misc_feature 3052..3102 /gene="CNTN1" /note="encodes COOH-terminal hydrophobic region; C-termPep" /citation=[1] /citation=[2] 3'UTR 3106..3335 /gene="CNTN1" regulatory 3208..3213 /regulatory_class="polyA_signal_sequence" /gene="CNTN1" regulatory 3292..3297 /regulatory_class="polyA_signal_sequence" /gene="CNTN1" BASE COUNT 1037 a 704 c 736 g 858 t ORIGIN 1 gaattccgtt taaaattatc caactgccat agagctaaat tcttttttgg aaaattgaac 61 cgaacttcta ctgaatacaa gatgaaaatg tggttgctgg tcagtcatct tgtgataata 121 tctattacta cctgtttagc agtttctgag gaagacaaag gatttggacc aatttttgaa 181 gagcagccaa tcaataccat ttatccagag gaatcactgg aaggaaaagt ctcactcaac 241 tgtagggcac gagccagccc tttcccggtt tacaaatgga gaatgaataa tggggacgtt 301 gatctcacaa gtgatcgata cagtatggta ggaggaaacc ttgttatcaa caaccctgac 361 aaacagaaag atgctggaat atactactgt ttagcatcta ataactacgg gatggtcaga 421 agcactgaag caaccctgag ctttggatat cttgatcctt tcccacctga ggaacgtcct 481 gaggtcagag taaaagaagg gaaaggaatg gtgcttctct gtgacccccc ataccatttt 541 ccagatgatc ttagctatcg ctggcttcta aatgaatttc ctgtatttat cacaatggat 601 aaacggcgat ttgtgtctca gacaaatggc aatctctaca ttgcaaatgt tgaggcttcc 661 gacaaaggca attattcctg ctttgtttcc agtccttcta ttacaaagag cgtgttcagc 721 aaattcatcc cactcattcc aatacctgaa cgaacaacaa aaccatatcc tgctgatatt 781 gtagttcagt tcaaggatgt atatgcattg atgggccaaa atgtgacctt agaatgtttt 841 gcacttggaa atcctgttcc ggatatccga tggcggaagg ttctagaacc aatgccaagc 901 actgctgaga ttagcacctc tggggctgtt cttaagatct tcaatattca gctagaagat 961 gaaggcatct atgaatgtga ggctgagaac attagaggaa aggataaaca tcaagcaaga 1021 atttatgttc aagcattccc tgagtgggta gaacacatca atgacacaga ggtggacata 1081 ggcagtgatc tctactggcc ttgtgtggcc acaggaaagc ccatccctac aatccgatgg 1141 ttgaaaaatg gatatgcgta tcataaaggg gaattaagac tgtatgatgt gacttttgaa 1201 aatgccggaa tgtatcagtg catagctgaa aacacatatg gagccattta tgcaaatgct 1261 gagttgaaga tcttggcgtt ggctccaact tttgaaatga atcctatgaa gaaaaagatc 1321 ctggctgcta aaggtggaag ggtgataatt gaatgcaaac ctaaagctgc accgaaacca 1381 aagttttcat ggagtaaagg gacagagtgg cttgtcaata gcagcagaat actcatttgg 1441 gaagatggta gcttggaaat caataacatt acaaggaatg atggaggtat ctatacatgc 1501 tttgcagaaa ataacagagg gaaagctaat agcactggaa cccttgttat cacagatcct 1561 acgcgaatta tattggcccc aattaatgcc gatatcacag ttggagaaaa cgccaccatg 1621 cagtgtgctg cgtcctttga tcctgccttg gatctcacat ttgtttggtc cttcaatggc 1681 tatgtgatcg attttaacaa agagaatatt cactaccaga ggaattttat gctggattcc 1741 aatggggaat tactaatccg aaatgcgcag ctgaaacatg ctggaagata cacatgcact 1801 gcccagacaa ttgtggacaa ttcttcagct tcagctgacc ttgtagtgag aggccctcca 1861 ggccctccag gtggtctgag aatagaagac attagagcca cttctgtggc acttacttgg 1921 agccgtggtt cagacaatca tagtcctatt tctaaataca ctatccagac caagactatt 1981 ctttcagatg actggaaaga tgcaaagaca gatcccccaa ttattgaagg aaatatggag 2041 gcagcaagag cagtggactt aatcccatgg atggagtatg aattccgcgt ggtagcaacc 2101 aatacactgg gtagaggaga gcccagtata ccatctaaca gaattaaaac agacggtgct 2161 gcaccaaatg tggctccttc agatgtagga ggtggaggtg gaagaaacag agagctgacc 2221 ataacatggg cgcctttgtc aagagaatac cactatggca acaattttgg ttacatagtg 2281 gcatttaagc catttgatgg agaagaatgg aaaaaagtca cagttactaa tcctgatact 2341 ggccgatatg tccataaaga tgaaaccatg agcccttcca ctgcatttca agttaaagtc 2401 aaggccttca acaacaaagg agatggacct tacagcctag tagcagtcat taattcagca 2461 caagacgctc ccagtgaagc cccaacagaa gtaggtgtaa aagtcttatc atcttctgag 2521 atatctgttc attgggaaca tgttttagaa aaaatagtgg aaagctatca gattcggtat 2581 tgggctgccc atgacaaaga agaagctgca aacagagttc aagtcaccag ccaagagtac 2641 tcggccaggc tcgagaacct tctgccagac acccagtatt ttatagaagt cggggcctgc 2701 aatagtgcag ggtgtggacc tccaagtgac atgattgagg ctttcaccaa gaaagcacct 2761 cctagccagc ctccaaggat catcagttca gtaaggtctg gttcacgcta tataatcacc 2821 tgggatcatg tcgttgcact atcaaatgaa tctacagtga cgggatataa ggtactctac 2881 agacctgatg gccagcatga tggcaagctg tattcaactc acaaacactc catagaagtc 2941 ccaatcccca gagatggaga atacgttgtg gaggttcgcg cgcacagtga tggaggagat 3001 ggagtggtgt ctcaagtcaa aatttcaggt gcacccaccc tatccccaag tcttctcggc 3061 ttactgctgc ctgcctttgg catccttgtc tacttggaat tctgaatgtg ttgtgacagc 3121 tgctgttccc atcccagctc agaagacacc cttcaaccct gggatgacca caattccttc 3181 caatttctgc ggctccatcc taagccaaat aaattatact ttaacaaact attcaactga 3241 tttacaacac acatgatgac tgaggcattc aggaacccct tcatccaaaa gaataaactt 3301 ttaaatggat ataaatgatt tttaactcgt tccaa //