LOCUS U00921 6853 bp DNA linear HUM 16-MAY-1997 DEFINITION Homo sapiens Lst-1 gene, complete cds. ACCESSION U00921 VERSION U00921.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6853) AUTHORS Holzinger,I., de Baey,A., Messer,G., Kick,G., Zwierzina,H. and Weiss,E.H. TITLE Cloning and genomic characterization of LST1: a new gene in the human TNF region JOURNAL Immunogenetics 42 (5), 315-322 (1995) PUBMED 7590964 REFERENCE 2 (bases 1 to 6853) AUTHORS Holzinger,I. TITLE Direct Submission JOURNAL Submitted (19-AUG-1993) Ingrid Holzinger, Human Genetics, Institute of Anthropology and Human Genetics, Luisenst. 37 80333 Munich, Munich, Bavaria 80333, Germany COMMENT On May 16, 1997 this sequence version replaced gi:392935. FEATURES Location/Qualifiers source 1..6853 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" /chromosome="6" /map="6p21.3" /clone="CAH5" /haplotype="A3 Bw47 Cw6 DR7" /cell_type="B-LCL" /tissue_type="blood" /clone_lib="CAH" gene 2302..3977 /gene="Lst-1" exon 2302..2420 /gene="Lst-1" CDS join(2418..2420,2743..2836,3612..3772) /gene="Lst-1" /note="B144 homolog" /codon_start=1 /protein_id="AAB57724.1" /translation="MIYVSTGAWGWAGSCFWQWSFCPPACVGCIEEEAQGSSEQELHY ASLQRLPVPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT" exon 2743..2836 /gene="Lst-1" repeat_region 3256..3348 /gene="Lst-1" /note="microsatellite Tnf e" /rpt_type=tandem repeat_region 3349..3477 /gene="Lst-1" /rpt_family="Alu" /rpt_type=dispersed repeat_region 3430..3574 /gene="Lst-1" /note="microsatellite Tnf d" /rpt_type=tandem exon 3612..3977 /gene="Lst-1" regulatory 3971..3977 /regulatory_class="polyA_signal_sequence" /gene="Lst-1" repeat_region 5416..5703 /rpt_family="Alu" /rpt_type=dispersed repeat_region 5945..6210 /rpt_family="Alu" /rpt_type=dispersed repeat_region 6419..6560 /rpt_family="MER5" /rpt_type=dispersed repeat_region 6630..6853 /rpt_family="Alu" /rpt_type=dispersed BASE COUNT 1798 a 1724 c 1832 g 1499 t ORIGIN 1 aagcttctga agggtttaga tgtaaaatgt actgatattt gtaattttaa aagatattta 61 aaagtgagat ggattgataa atatgtgata aagcaaataa aaaatgttaa tagagccagg 121 tgcagtggcc cactcctgta attccagcac tttggaaggc taaggtggaa agattgcttg 181 agaccaggag ttcaaaatca gcctgggcaa catagtaaga ccccatttct acaaagcctc 241 atgtggtagc tggtgtctgt agtcctagct actcagaagg ctaaggtggg aggacctctg 301 agcccaggaa ttcaattctg cagtgagcta tgatttcacc actgcacttc aggctgagtg 361 acagagtgag accccatctc aaaaacaaaa caaaacaaaa aatgttaata gtagcatcta 421 ggtggtaaga atatgttcac tgtacaatta ttctcatttc accctatgtt tgcacttttt 481 aataataaaa tgtaaaaaaa acaaaacaaa caaacaaaaa accctgaata ttattcagca 541 tggggaacat ggaggatggg gagaagggtg ggggaggaag tagaaggttc ttgaatttgg 601 aaggggaaac gcaaattaat atggacccac ccaggcacca catctcctcc tcaccccttg 661 ccttacaggc gctccccagt cttcaccctc ctcaaggagt gggtgtgcaa tcctccagca 721 cccatctcct tctccatcac agtgccacta agaagccttc acccaggtct ctccagagag 781 cctcaggccg ctgcctttac ttagttctgt gttcaatgcc agaatgctgc ctcctacagg 841 aagtccacct gtattgccca cacctccttt cctgtcacca acttgtcacc aactttctgt 901 ccttgatcta tccacagggc tcatgtagat ctagtatggc tgcctttaac tctcatgttt 961 gttaatcaga cagccaagca gcctgctgca tagagctgca gaacaccaaa tatgccagag 1021 ctcccagtct gaactggagc agggtacatg tgtccacaga catatgccaa gatcaagagg 1081 tctcaacaga tgcagtgtaa gaggtaatag agaagagtta atcaaggaag acacctgaag 1141 gtggtgggtg tttgctgact agtggcagga tcagtgaaat gactggagct gaggcagatt 1201 atggccctag ctacaggccc agaagtttga aaagaaagat gttgtaaccc taaccctgga 1261 gccgaacttc ctctcctaac aatgctgggg aggaacccag gctgggggag aagttaaagc 1321 cagaggaggg gcaggaatgt ctgaggtggc aacacttctc ttcagccaga cagcactggc 1381 cagtttggag tctgtccatc ctgcaggcca caagctctgg gtaagctggg aatgggcagg 1441 gaccttggtg gaaggatggt cacaccccag agtggggtga agctaagatg aggggaggga 1501 gagtatgggt ttgagtttcc ctgggccgtc gaggaatcct ctgagtctct gctccccaaa 1561 gaaattaaag acaattcatt tctgtgccca cggcccttat ggctccacct gcacttctgc 1621 tccccacccc ccagaattcc tcttaaaccc agaaggtccc agtttccaga ccctagtcag 1681 tatatctggc tctggggtga agagaacggc cccctcttca ccctcaaaca ggaaccagtg 1741 gttggagggg aggaagtgcc tgaggggaag ttatggggcc ccagatactc ctccatgccc 1801 cacttcagcc ctagcagcat ctgcctgtgg gaagcagctc tccacaccag ccaagggggc 1861 ccccacactc ccgcgctgct ctgcggctca gggagcagcc cacctgctgg gtgtgctgat 1921 atcaccctcc cttcttcccc ccagtgccca cacccaccca ggcccaggct ccttcccctc 1981 catcatcccc ttaccagcac ctagaaccat ccagggctga aaagtcccct ccaaaccacg 2041 tggtcagccc agggcagagg aaagggctgg gctctggagt tgggcagagc tggccttaaa 2101 ccccagctcc acctttctgg gatgggtgac ctagtaaagt ccaggcttga atctcgggtc 2161 tttacttggg caacgggcac catgataccc tatgttctgg ggattagcag tgaggaatgg 2221 aaagtgccca gctcgggttg gcacataagg gaggctcccc agcctgggaa cgattataac 2281 agagggcccc tcacttcaca gatgaggaac ttgaggcaag tcaccagccc ctgatcattt 2341 cgcctaaaag agcaaggact agagttcctg acctccaggc cagtccctga tccctgacct 2401 aatgttatcg cggaatgatg gtaagtaaag tgtctcttgc atctgcatag agagagtcct 2461 gggagcttag gaagtgatgg ggaacagtga tgtatgcagc tcatgactag gtggacaggc 2521 ctctggggac agctggtaca ggagggaaag ggacctcacg ggaggcccag aaacctggta 2581 agaggtgagg tattaaggtc tgggatggag aagctctgag ggtatatttt tctgcctcta 2641 aaactgttgg agagggaatc tgagaaagct gcaaccaacc aggaggctgg ggtacgctgg 2701 agaaggaatg ggcttcctaa ccttgagccc tcttccctga agatatatgt atctacgggg 2761 gcctggggct gggcgggctc ctgcttctgg cagtggtcct tctgtccgcc tgcctgtgtt 2821 ggctgcatcg aagaggtgag cgctgcactc cctccctccc cctgcagcag tgccccctgt 2881 gcccccaccc ccacacgctt tcccactgct ttcccagaac actgcctggc cctggagcca 2941 ctgggaagcc aacaggggag tccacgcctg ctggtggggg gagcccggga ggcgggagaa 3001 gcacaaaggg tgggctgtgt tgagcttctt cttttcttcc agtaaagagg ctggagagga 3061 gctgggtgag tctggggaca gggaaggggg agggcaagag agatcctgag tgggtgagtg 3121 gggagaagca tggctgagcg ctgagaggag ggttggggac gggagacaag gagagagaaa 3181 gtaggagcat gagagaggca gagaaaatcg aggcaaaaga gaaagagaaa atgagacaga 3241 aaccaagaga aaaagtgaga cagaggatag gagagacagg gagaaaatga gagtgagaga 3301 gacacaaaga gaagagcaat gaaagagaga gagagagaga ggctccagaa ccaggcacag 3361 tggctcacgt ctgtcattcc actatcgcaa ggctgaggca ggaagatagc ttgagctcag 3421 gggttgaaga caatcctgga caacatagtg gactctgtct ccaaagaaaa aagagagaga 3481 gagagagaga gagagagagg gagagagaga gagagagagg gagagaagta agaaaggctg 3541 gaggtgggag cagaactcac agggaaggat ctgacgcatc gcctcccatc agcaccttct 3601 gtcctggtcc caggcccagg gctcctcaga gcaggaactc cactatgcat ctctgcagag 3661 gctgccagtg cccagcagtg agggacctga cctcaggggc agagacaaga gaggcaccaa 3721 ggaggatcca agagctgact atgcctgcat tgctgagaac aaacccacct gagcacccca 3781 gacaccttcc tcaacccagg cgggtggaca gggtccccct gtggtccagc cagtaaaaac 3841 catggtcccc ccacttctgt gtctcagtcc tctcagtcca tctcgagcct ccgttcaaat 3901 tgatcatcat caaaacttat gtggcttttt gacctttgaa tagggaattt tttaaatttt 3961 ttaaaaatta aaataaaaaa aacacatggc tcacccttcc acccactctg gggtcaaata 4021 gtaatttgtt gggtgaatga cagtgttcag ggacccaagc tcccctaaca gccagaagag 4081 ggtatgtgtg ggcctggcag gaaagggcag ttgccaagga ggagtcatat ctgatccttc 4141 ccatttctca ggacaatcag gctcagcctc ctgggactgg gggaagcaga tgtgctgagc 4201 tcccacatgg tggtgggagg ggcgctggga ccacagccgg cagctgcctt cttggacctt 4261 tccaggtcag acctggtgga agggaaagtt cagagttggg ggaatccgga gagagtagat 4321 ttggcatctg gagaatggag aagaaaacac ttgagactca tgaggagtta gtggtggggc 4381 agatttattg gggtcttttg aagaggacta gggacatctg ggctctggaa tcactcctcg 4441 gggcccatct gaggagtggc agtgtgttcc catgtgacag tggcctggtc agagagagga 4501 caggagctgc tcagtgttgc agtcccgagg ctctcctctt cctggtctct gtcctccctc 4561 ctcccactct cttactgccc ctcccatccc gtccactatt gcccctggct ccattactca 4621 catttgccct ggtaatagac ggtgctgccc acggccacag agagaaagct gacagcatag 4681 aatccagccc gaaggaggag gactgtacca gcccctagct gaggatgttc tgcatggggc 4741 aatggagacg ggggttgggg aagaagtgca cacaggctca gggagggaag gggcctcaga 4801 ggagcatccc tgcctcccaa ggacattgcc tcttggggcc tccagccagg aggagacacc 4861 acctcccagc atctcacctt tctccaccac cagccgagtc ccattccctg tcccgacacc 4921 aaggcccagc acctccactc tgcacacgta gatgctggcg tcatggcctc gcacgtcccg 4981 gatgtgcagc tcagcctggt ggtcatggag gaaacgggaa gaagcaagtg gggccaggcg 5041 gcccctgaac tctggggttc cattcctcac ctccttccct ggaaccacct catctcggaa 5101 ccacgtgacg gagccaatgg ccagtctccc ttggctggca ttgaaggagc agggcaggaa 5161 ggcagaggat ccttccaggg tacgaatctc agggggctgg gacacccaga gagcacagga 5221 atcctggggg gaaaagggag acccagagaa acacctcccc agttattcca aagagaaaag 5281 acaacagagc ttggagtaga acatcccagc tttctccagg catagggtgc atgggaatag 5341 atactttggg gcctcattaa acccttccct cttaaccaat ctgatttctt aacattgctt 5401 attaaatcat ttttcggctg ggtgcagtcg cacgcctgta atcccagcac tttgggaggc 5461 cgaggtgggc ggatcaccag gtcaggagat cgagaccatc ctggccaaca tggtgaaacc 5521 ccgtctctac taaaaaaata caaaaattag ccgggcatgg tggtgtgcac ctgtaatccc 5581 agctactcgg gaggctgagg caggagaatc gcttgaaccc gggaggcaga ggttgcagtg 5641 agccaagatt gcgccattgc actccagcct gggcgacaaa gcaagactcc atctcaaaaa 5701 ataaaaaata aaaatcattt ttcaaattct tcctatacca actctcactc tcaccctctg 5761 ccatcattct ccagccagtt cagtagtaac ttgtctagct gaaatgtaaa ccatcatggt 5821 gaaattaagc tcattaatga attgcagctg cctagttaac taatatcact cattatatta 5881 tgcaggtatt attttagtac aaatggcatt gtacagtaag ccatccttcc tctttttctt 5941 ttttcttttt ttgagatggg gtcttgctct gttgcccagg ctggaatgca gtggtgcaat 6001 cttggctcac tgcaaactcc gtcccctggg ttcaagcgat cctggtgcct cagcctccca 6061 agtagctggg actacaggca cccaccacca cgactggcta atttttgtat tttcagtcga 6121 gacagggttt ccaccatctg gtctcaaact cctgacctca agtgatccac ccacctcgga 6181 ccaggctggc tcaaactcct gatctcaagt gatccacctg cctcggcctc ccaaagtgcc 6241 acccagccac tcttggtttt cgttaaagaa agtaactaat taaatctcca ggtgaagacg 6301 tggccttaat tggttgagat tcctatttaa cccgtccatg ttgatgaatt aaaccaaata 6361 ttaaaatccc tgattaaatt atctacttag ggaaatttac aagtcattct atttcagtgg 6421 ttctcaaact tgagtgtgta tggaaattac ctggagcatc tgctagaaca gattcctggg 6481 cctacccccc gagtttttga ctcagtaggt ctggagtggg gcctaagaat ttgttctagg 6541 ttcccagaaa tccacatttt gagaactcct gcatttagtt aataatatgc ctgatagtta 6601 aggtctctca gttcattaaa aacagtttcg gccgggtgca gttcgcacgc ctataatccc 6661 aacactttgg gaggccaagg cgagtggatc acctgaggtc aggagtttga gaccagcctg 6721 gccaacatgg tgaaacctcg tctctactaa aaatacacaa gttagccagc agtaatggca 6781 tgcacctgta atcctagcta cttgggaggc tgagacagga gaatcatttt tacccaggag 6841 gtggaggctg cag //