LOCUS HUMCOL9A2A 2542 bp mRNA linear HUM 08-NOV-1995
DEFINITION Human alpha 2 type IX collagen (COL9A2) mRNA, partial cds.
ACCESSION M95610
VERSION M95610.1
KEYWORDS collagen; collagen fibril; extracellular matrix; hyaline cartilage;
proteoglycan.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 106 to 1960)
AUTHORS Perala,M., Hanninen,M., Hastbacka,J., Elima,K. and Vuorio,E.
TITLE Molecular cloning of the human alpha 2(IX) collagen cDNA and
assignment of the human COL9A2 gene to chromosome 1
JOURNAL FEBS Lett. 319 (1-2), 177-180 (1993)
PUBMED 8454052
REFERENCE 2 (bases 1961 to 2029)
AUTHORS Warman,M.L., McCarthy,M.T., Perala,M., Vuorio,E., Knoll,J.H.,
McDaniels,C.N., Mayne,R., Beier,D.R. and Olsen,B.R.
TITLE The genes encoding alpha 2(IX) collagen (COL9A2) map to human
chromosome 1p32.3-p33 and mouse chromosome 4
JOURNAL Genomics 23 (1), 158-162 (1994)
PUBMED 7829066
REFERENCE 3 (bases 106 to 1960)
AUTHORS Perala,M.
TITLE Direct Submission
JOURNAL Submitted (16-MAR-1993) Merja Perala, Medical Biochemistry,
University of Turku, Kiinamyllynkatu 10, 20520 Turku, Finland
REFERENCE 3 (bases 1 to 2542)
AUTHORS Perala,M.
TITLE Direct Submission
JOURNAL Submitted (22-AUG-1995) Merja Perala, Medical Biochemistry,
University of Turku, Kiinamyllynkatu 10, 20520 Turku, Finland
COMMENT On Nov 8, 1995 this sequence version replaced gi:180841.
Original source text: Homo sapiens cDNA to mRNA.
FEATURES Location/Qualifiers
source 1..2542
/db_xref="H-InvDB:HIT000196900"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/cell_type="chondrocyte"
/tissue_type="hyaline cartilage"
/dev_stage="fetal"
gene 1..2542
/gene="COL9A2"
CDS <1..2029
/gene="COL9A2"
/codon_start=2
/product="alpha-2 IX collagen"
/protein_id="AAA80977.1"
/translation="LQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGK
AGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPG
FAGPPGPPGPVGLPGEIGIRGPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLC
PTNCPPGMKGPPGLQGVKGHAGKRGILGDPGHQGKPGPKGDVGASGEQGIPGPPGPQG
IRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGP
QGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGP
GDQGEPGPQGLPGFSGPPGKEGEPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQG
PKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGP
KGQQGVRGEPGYPGPSGDAGAPGVQGYPGPPGPRGLAGNRGVPGQPGRQGVEGRDATD
QHIVDVALKMLQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGYPGKQGPHGHPGPRG
VPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLPGRPGQAINGKDG
DRGSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASARLTEPGSIKGP"
BASE COUNT 509 a 760 c 915 g 358 t
ORIGIN
1 actccaggtg gtagtgctcg ctctggcgca gattagaggt ccaccgggag agcggggccc
61 cccgggtccc ccgggaccgc cgggagtgcc tggatccgac ggcatcgacg gtgacaatgg
121 gccccctgga aaagctggcc ctccgggacc caagggcgag cctggcaaag ctgggccaga
181 tgggccagac gggaagcccg ggattgatgg tttaactgga gccaaggggg agcctggccc
241 catggggatc cctggagtca agggccagcc cgggcttcct ggtcctcctg gccttccggg
301 ccctggtttt gctggacctc ctgggcctcc tggacctgtt ggcctccctg gtgagattgg
361 aatccgaggc cccaaggggg accctggacc agatggacca tcggggcccc caggaccccc
421 tgggaaacct ggtcgcccgg gaaccatcca gggtctggaa ggcagtgcgg atttcctgtg
481 tccaaccaac tgtccacccg gaatgaaagg tcccccaggg ctgcagggag tgaaggggca
541 tgcgggcaaa cgcgggattc tgggtgatcc tggccaccag gggaagccgg gtcccaaggg
601 agatgtgggt gcctctggag agcaaggcat ccctggacca ccgggtcccc agggcatcag
661 gggctaccca ggcatggcag ggcccaaggg agagacgggc cctcatggat ataaaggcat
721 ggtgggcgct atcggtgcca ctgggccacc gggtgaggaa ggtcctaggg gaccgccagg
781 ccgagctggg gagaagggtg acgagggcag cccaggtatt cgtggacccc aggggatcac
841 aggcccgaaa ggagcaacgg gccccccagg catcaacggc aaggatggga ccccaggcac
901 gcctggcatg aagggcagtg caggacaggc gggacagccc ggaagtccag gccaccaggg
961 cctagcgggt gtgccaggcc agcctgggac aaaaggaggc cctggagacc agggtgagcc
1021 gggcccgcag ggccttcctg gattctctgg tccccctggg aaagagggag agccagggcc
1081 tcgaggagaa attggtcccc agggcatcat gggacagaag ggtgaccaag gcgagagggg
1141 tccagtgggg caaccaggcc ctcagggaag gcagggccct aagggggagc agggcccccc
1201 cggaattcca gggccccaag gcttgccagg cgtcaaagga gacaagggct ccccagggaa
1261 gaccgggccc cgcggcaaag tgggtgaccc aggggtggcc ggcctccccg gagagaaagg
1321 cgagaagggc gagtccggcg agccggggcc caagggacag caaggagtac gtggagaacc
1381 cggctaccct gggcccagcg gggatgcggg cgccccaggg gttcagggct accctggtcc
1441 ccccggccct cgaggactgg ccgggaaccg aggcgtgcca ggacagcccg ggagacaggg
1501 cgtggagggc cgggatgcca ctgaccagca catcgtggat gtggcgctga agatgctgca
1561 agagcaactg gcagaggtcg ccgtgagtgc caagcgggaa gccctgggtg cggtgggcat
1621 gatgggtcct ccaggacctc ctgggccccc tgggtaccca ggcaagcagg gcccccatgg
1681 gcaccctggc cctcggggcg ttcctggcat cgtgggagcc gtgggtcaga tcggcaacac
1741 ggggcccaag ggaaaacgtg gagagaaggg tgatccagga gaagtgggac gggggcaccc
1801 cgggatgcct gggcccccag ggatcccagg acttcctggc cggcctggcc aggcaatcaa
1861 cggcaaggat ggagatcgag ggtccccagg ggctccagga gaggcaggtc gacctggcct
1921 gccaggcccc gtggggctgc cgggcttctg tgaacctgcc gcctgccttg gagcttcggc
1981 ctatgcctct gcccgcctta cagagcctgg atccatcaag gggccttgag catcaggccc
2041 agacagagcc tggcaggcat cctggcggga aggaccaggt cccctctggt ggacatgcac
2101 ccatccccag tccaggaaac catctccccc aggaccttct gtctgggact caggagtcct
2161 aaggaaaagg aattctaaaa catgggggaa ggggaggtag agcactgatg ggtgaaaaag
2221 tgaggccaac acacagggca agtggtgtcg atggagtcga agcgctgaag gaatagggcg
2281 gctttccttc cagcgagcat cattcggctg ttaccaaaac aaacatctta atctgcacct
2341 tcctccactg gccatcttgt ccttgggtca gtgggacatg ggcacctcgg gaggcccggg
2401 ccctgcccag ctacagttcc acccctcagc ttgaggacca atactgaggt ctatgccagt
2461 tcctgatccc atctcactct ctggacctac taggtgactg ctgctggggt gactcccctg
2521 aggcggctat acccttaagc ca
//