LOCUS HUMCOL16A 5387 bp mRNA linear HUM 31-DEC-1994
DEFINITION Homo sapiens alpha-1 type XVI collagen (COL16A1) mRNA, complete
cds.
ACCESSION M92642
VERSION M92642.1
KEYWORDS alpha-1 type XVI collagen; extracellular matrix protein.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5387)
AUTHORS Pan,T.C., Zhang,R.Z., Mattei,M.G., Timpl,R. and Chu,M.L.
TITLE Cloning and chromosomal location of human alpha 1(XVI) collagen
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89 (14), 6565-6569 (1992)
PUBMED 1631157
COMMENT Original source text: Homo sapiens cDNA to mRNA.
FEATURES Location/Qualifiers
source 1..5387
/db_xref="H-InvDB:HIT000196827"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/cell_type="Fibroblasts"
gene 1..5387
/gene="COL16A1"
5'UTR 1..153
/gene="COL16A1"
CDS 154..4965
/gene="COL16A1"
/codon_start=1
/product="alpha-1 type XVI collagen"
/protein_id="AAA58427.1"
/translation="MWVSWAPGLWLLGLWATFGHGANTGAQCPPSQQEGLKLEHSSSL
PANVTGFNLIHRLSLMKKSAIKKIRNPKGPLILRLGAAPVTQPTRRVFPRGLPEEFAL
VLTLLLKKHTHQKTWYLFQVTDANGYPQISLEVNSQERSLELRAQGQDGDFVSCIFPV
PQLFDLRWHKLMLSVAGRVASVHVDCSSASSQPLGPRRPMRPVGHVFLGLDAEQGKPV
SFDLQQVHIYCDPELVLEEGCCEILPAGCPPETSKARRDTQSNELIEINPQSEGKVYT
RCFCLEEPQNSEVDAQLTGRISQKAERGAKVHQETAADECPPCVHGARDSNVTLAPSG
PKGGKGERGLPGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLP
GSTGEKGQKGEKGDGGIKGVPGKPGRDAPGEICVIGPKGQKGDPGFVGPEGLAGEPGP
PGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEV
CPTLPEGFQNFVGLPGKPGPKGEPGDPVRARGDPGIQGIKGEKGEPCLSCSSVVGAQH
LVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIK
GAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQ
KGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRP
GQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAP
GLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGL
RGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPP
GPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEK
GEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQ
RGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQP
GYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSG
EKGDQGFQGQPGFTGPTGSPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGP
PGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP
GPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGE
RGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQA
GEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYD
EIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGL
PGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGP
MGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKTMKGPFG"
sig_peptide 154..216
/gene="COL16A1"
mat_peptide 217..4962
/gene="COL16A1"
/product="alpha-1 type XVI collagen"
/experiment="experimental evidence, no additional details
recorded"
3'UTR 4987..5387
/gene="COL16A1"
BASE COUNT 1153 a 1520 c 1817 g 897 t
ORIGIN
1 gggacccgtg accgtcacgg agagatagag aacccctagc ggacctgagg aacctgggct
61 ctgcttcctc cgcctgctgc ctggactgct cagtgaggtg gggggatccc cggccaccgg
121 tgctgtggct gtagctgacc tctttggacc gggatgtggg tatcctgggc tcctggcctg
181 tggctgctcg gtctttgggc taccttcggc catggggcaa atacaggtgc acaatgccca
241 ccttcacagc aggaaggact caaattggaa cacagtagta gcctgccagc caacgtgact
301 ggcttcaacc tcatccaccg actcagcctc atgaagaagt ctgccatcaa gaagatccgc
361 aaccccaagg ggcctctcat cctgcgcctg ggggcggccc ccgtgaccca gcccacgcga
421 cgagtattcc ctcggggtct cccggaggag tttgccctgg tgctgacact actgctgaag
481 aaacacaccc accagaagac gtggtatctg tttcaagtga ccgatgcaaa tgggtatcca
541 cagatatccc tggaagtcaa cagccaagag cggagcctgg agctcagggc ccagggccag
601 gatggcgact ttgtgtcctg catcttccca gtgccccagc tcttcgactt gcgttggcac
661 aagctgatgc tgagtgtggc tggacgtgtg gcctctgtgc acgtggactg cagctcagcc
721 tcctcccagc ctctggggcc ccgacgaccc atgaggcctg tgggccatgt atttctaggc
781 ttggatgctg agcagggcaa gcctgtctcg tttgaccttc agcaggtgca catctactgt
841 gacccggagc tcgtgctgga ggagggctgc tgtgagattt taccagcagg gtgcccccca
901 gagacctcca aggcccgccg ggacacccag agcaatgagc tcattgagat caatccacag
961 tctgaaggca aggtctacac ccgctgcttc tgcctggagg agcctcaaaa cagcgaggtg
1021 gatgcccagc tgacgggaag aatcagccag aaggcagaaa ggggagcaaa ggtccatcag
1081 gagacagcag ccgatgagtg tccgccctgt gtccatggtg cccgggacag caatgtcaca
1141 cttgctccct ctggccccaa gggagggaaa ggtgagcggg gcctgcctgg tccaccaggc
1201 tccaagggag agaagggagc acggggcaat gactgtgttc gaatctcccc ggatgccccg
1261 cttcagtgtg cagaaggccc gaagggagag aagggggagt caggagctct gggaccctca
1321 ggactcccag gctcaacagg cgagaagggc cagaaaggcg agaagggcga cggaggcatc
1381 aagggcgtgc cgggaaagcc aggccgggac gcgccaggag agatctgtgt cattgggccc
1441 aaagggcaga agggagaccc tggctttgtt gggcctgagg ggctggcagg agagcctggg
1501 ccccccggcc tccctggacc ccctgggata ggactgcctg ggaccccggg ggatccaggt
1561 ggcccaccag gccccaaggg agacaagggc agctcgggga tcccaggaaa ggaaggccct
1621 ggtgggaaac ctgggaagcc aggtgtgaag ggagagaagg gtgacccctg tgaagtgtgc
1681 ccaacactgc ctgaagggtt ccagaacttt gttggacttc ctggaaagcc agggcccaaa
1741 ggggagcctg gtgatcctgt acgagccagg ggagaccctg gcatccaagg catcaaagga
1801 gagaaggggg agccctgctt gtcctgcagc tcggttgtag gggcccagca tcttgtgtcc
1861 tccacagggg ccagtggaga tgtgggttcc cctggctttg gtctgcctgg ccttccgggt
1921 agagctgggg ttccagggct gaaaggagag aagggtaact tcggggaggc agggccagct
1981 ggcagtccag ggccaccagg accagtgggg ccagcaggca tcaaaggggc gaagggggag
2041 ccctgtgagc cgtgcccagc cctgtccaac cttcaggatg gggatgtccg tgtggtggcc
2101 ttgcctggcc catccggaga gaagggggaa cctgggcctc caggctttgg cttgccagga
2161 aaacagggca aggctggaga gcgtggactg aaggggcaga agggtgatgc tgggaatcct
2221 ggagaccctg gaacgccggg caccacaggg cggccaggac tgtcaggaga gcctggagtt
2281 cagggccccg cggggccaaa aggagaaaag ggtgatggct gcactgcctg ccccagcctg
2341 caggggacag tgacagacat ggcaggacgg cctgggcagc ccgggcccaa aggagagcag
2401 ggccccgaag gcgtgggccg acctggtaaa cccggccaac ccggtctacc aggagttcaa
2461 gggcccccag gactgaaggg cgtgcaggga gagccagggc ctccaggaag gggagtccag
2521 ggaccccagg gggagcctgg agccccgggt ttgcctggca ttcagggact tccgggacct
2581 cggggaccac ctggccccac tggagagaag ggtgcccagg gatctccagg ggtgaaagga
2641 gccaccggac ccgtgggacc tcctggggcc agtgtctctg ggcctccggg ccgtgatggg
2701 cagcaaggac agacgggact cagaggaaca ccaggtgaaa aaggaccacg aggagagaag
2761 ggtgagccag gggagtgctc ctgcccctct caaggagacc tcatcttctc tggcatgccg
2821 ggtgctccgg gactttggat gggcagctcc tggcagccgg gcccgcaggg tccaccaggt
2881 attcccggac caccaggccc ccctggagta cctgggctgc agggagtgcc tggaaacaac
2941 ggtttgccag gacagcctgg gctcactgca gaactgggat ccttaccaat tgaacagcac
3001 ctccttaaga gtatctgcgg ggactgtgtc caggggcaga gggcccaccc agggtacctc
3061 gtggagaagg gagagaaggg agaccagggc atccctggtg tgccaggcct cgacaactgc
3121 gcccagtgct ttttgtcact ggagcgccca agagccgagg aggcccgggg tgacaacagt
3181 gagggagatc ctggctgtgt tgggagccca ggcctacctg gtcctccggg attgccaggc
3241 cagagaggag aagagggtcc gcctggcatg aggggctccc cgggtcctcc aggccctatc
3301 ggccccccag gttttcctgg tgctgttggc tcccccggat tgcctggcct tcaaggagag
3361 cgaggtctca cgggcctgac tggagacaag ggggagccgg gtcctccagg gcaaccaggt
3421 tacccaggtg ccacgggccc cccaggactg cctggcatca agggggagcg tggctacacc
3481 gggtcagcgg gagagaaagg agagccgggc cccccaggat ctgaaggcct cccaggcccc
3541 ccaggcccag cgggtcccag aggagagcga ggaccccaag gtaactccgg tgagaagggc
3601 gaccagggat ttcaaggcca gccaggcttt accgggccca ccgggtcccc tggattccca
3661 ggcaaagttg gatcacctgg cccacctggc cctcaagcag agaagggcag cgaagggatt
3721 cgaggcccat caggcctgcc tggctcccct gggccaccgg gacctcctgg gattcagggc
3781 cccgccggtc tggatggttt ggatgggaag gacggcaagc ctggcttgag gggggaccct
3841 ggtcctgctg gcccccctgg actcatggga ccaccgggct ttaaggggaa aacaggacat
3901 cctggcctcc caggacctaa gggtgactgt ggcaaaccag gtccccctgg cagcactggc
3961 cggcctggcg cagagggtga acctggtgcc atgggacccc agggaagacc cggtcccccg
4021 ggacacgttg ggccaccagg gcctccaggc cagccaggac cagctgggat ctctgcagtg
4081 ggtctgaaag gagaccgagg agccaccgga gaaaggggcc ttgcaggcct cccaggccag
4141 cccggccccc ctggacaccc tggcccccca ggcgaacctg gtacggatgg tgcagctggc
4201 aaagagggac cccctggaaa gcagggattc tatggacctc ctggtcccaa gggtgatcca
4261 ggagctgcag gacagaaggg ccaggcagga gagaagggga gagccggcat gcctggtgga
4321 cctggcaaga gtggttccat ggggcctgtt gggccaccgg gccctgcagg agagagaggc
4381 caccctggag ctccggggcc ttcggggagc cctggcttgc ctggtgtgcc tggctccatg
4441 ggagacatgg tgaattatga tgaaatcaag aggttcatca gacaagagat cattaaaatg
4501 tttgatgaga gaatggctta ctacacctcc aggatgcagt tccccatgga gatggcggca
4561 gctccgggac gaccagggcc tccagggaag gatggtgctc cgggcaggcc aggtgctcca
4621 gggtcacctg ggctccctgg tcagattggc agagaaggac ggcagggctt gccaggagta
4681 agaggattgc ctggtaccaa aggtgaaaaa ggggacattg gtattggcat tgcaggagaa
4741 aatggtcttc ccggcccccc aggtcctcaa ggtcctccag gctatggcaa gatgggtgca
4801 acaggaccaa tgggccagca aggcatccct ggcatccctg ggcccccggg tcccatgggc
4861 cagccaggca aggctggcca ctgtaatccc tctgactgct ttggggccat gccgatggag
4921 cagcagtacc cacccatgaa aaccatgaag gggccttttg gctgaaattc cccacctgcc
4981 tttggatgaa agactccgtt gggaataaat ggccaaagct tataggactc tgtgacaggt
5041 tgtgaatgtt tttttttttt gttgttgttg tttttaattg ctgttaatat tttttaaata
5101 ataaagaaac aaaactatct gccctttccc ttccagtggg ttcctctggt gctgcagcca
5161 gagctccctg ttgccctcct tttcccgttt agtcccagga acaaaaaggg catttgggta
5221 caggggcata tacctgtaat cctagctatt caaggggctg aggtgggagg atcgcctgag
5281 cccaggagtt tgagaccagt ctaagcaaca taatgagact cagtctccga aaaataaaaa
5341 ttaaaaaata aagggtattt ccctccttaa aaaaaaaaaa aaaaaaa
//