LOCUS HUMAIXIII 1966 bp mRNA linear HUM 30-OCT-1994
DEFINITION Human collagen type XIII alpha-1 mRNA, complete cds.
ACCESSION M59217 J05580
VERSION M59217.1
KEYWORDS alpha-1 type XIII collagen; alternative splicing.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1966)
AUTHORS Pihlajaniemi,T. and Tamminen,M.
TITLE The alpha 1 chain of type XIII collagen consists of three
collagenous and four noncollagenous domains, and its primary
transcript undergoes complex alternative splicing
JOURNAL J. Biol. Chem. 265 (28), 16922-16928 (1990)
PUBMED 1698771
COMMENT Original source text: Human endothelial DNA, cDNA to mRNA, clones
E-3, E-12 and E-26.
FEATURES Location/Qualifiers
source 1..1966
/db_xref="H-InvDB:HIT000195888"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/map="10q22"
/cell_type="endothelial"
gene 1..1966
/gene="COL13A1"
CDS join(122..1453,1499..1648,1685..1957)
/gene="COL13A1"
/codon_start=1
/product="alpha-1 type XIII collagen"
/protein_id="AAA51685.1"
/db_xref="GDB:G00-119-789"
/translation="METAILGRVNQLLDEKWKLHSRRRREAPKTSPGCNCPPGPPGPT
GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGFPGH
PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQ
ASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMP
GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIG
GGRGEPGPPGLPAPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPG
KGEMVDYNGNINEALQEIRTLALMGPLGLLGQIGPLGALGMLGQKGEIGLLGPLGHDG
KGPRGKLGDMGPLGPQGPLGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPG
PEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGP
KGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLD
APCPLGEDGLPVQGCWNK"
BASE COUNT 466 a 533 c 709 g 258 t
ORIGIN
1 gtcgtgcggg ctgctgacgc tggccctctg ctcgctggca ctcagcctgc tcgcccactt
61 tcggacggcc gagctgcagg cccgggtgct gcgcctggaa gcggagcgcg gggagcagca
121 aatggagaca gctattttgg gacgagtcaa tcaactgctg gacgagaaat ggaagctcca
181 ctcaaggagg cgccgggagg ccccaaagac atctccagga tgtaactgcc caccaggacc
241 tcctggtccc actggaagac ccggactccc aggggacaaa ggtgccattg ggatgcctgg
301 acgtgtgggg tcccccggag acgctgggct gtccatcatt ggtccccgcg gcccccctgg
361 tcaaccaggc actagaggtt tccctggatt tccgggtccc attgggctgg acggctttcc
421 gggccaccca ggaccaaagg gcgacatggg tctgacgggt cccccaggac agccgggacc
481 ccagggacaa aaaggagaaa agggtcagtg tggagagtac ccacaccggg agtgcctaag
541 cagcatgcca gcagctctgc gctccagcca gataattgcc ctgaagggcg aacagagcca
601 ggccagcatc caaggtccac cagggccccc aggcccccct ggaccaagtg gacctctggg
661 gcacccagga ctgccagggc ctatggggcc acctggctta cctgggcctc ctggaccaaa
721 gggagaccca gggatccagg gctaccacgg ccggaaggga gaacggggca tgccagggat
781 gccaggcaag catggagcca agggggcgcc cggaattgcc gtggctggga tgaagggtga
841 gccagggatc ccaggaacca agggtgagaa gggggctgaa ggctcccctg ggcttcctgg
901 cctcctgggg cagaagggag agaaaggcga tgctggcaac tccattggag gaggcagagg
961 ggaacctggc cctccagggc tccctgcgcc cccagggcca aagggagaag caggtgtcga
1021 tggccaggtt ggccccccag ggcagccagg agacaagggg gagcgtggag cagctggaga
1081 acagggacca gatggcccca agggctccaa gggagaacca gggaaaggag agatggtgga
1141 ttacaatgga aacatcaatg aggctctcca ggagatccgg acgctggcct tgatggggcc
1201 tcttggtctt cttgggcaaa ttggcccact tggagctcta gggatgctag gccagaaggg
1261 ggagattgga ctgctaggcc ctctaggaca cgatgggaaa ggacctcgcg gtaaactagg
1321 agacatgggc cctcttggtc cccaaggccc cctaggaaag gatggacctc caggagtgaa
1381 gggagaaaac gggcacccag ggagcccagg agagaagggg gaaaaagggg agacaggaca
1441 agcaggctca ccgggagaga aaggagaagc cggggagaag ggcaatccag gagcagaggt
1501 tcctgggctg ccagggccag aggggcctcc cggacctccg gggctccaag gtgttcctgg
1561 accaaagggg gaagcaggac tagatggagc aaaaggagag aaaggcttcc agggagaaaa
1621 aggagaccgt ggtcccctgg gactacccgg agcttcaggt ttggacggca ggcctgggcc
1681 accgggtact ccaggaccaa ttggagttcc aggcccagcg ggaccaaagg gcgagagggg
1741 cagcaaagga gaccctggga tgacaggacc aacgggagca gctgggcttc ctggtttaca
1801 tggaccaccc ggggacaagg gaaaccgggg ggagaggggg aagaaaggct ctagagggcc
1861 taaaggggac aagggagacc aaggagcgcc tggattagat gccccctgcc cattgggcga
1921 agatggctta ccagtccaag gctgctggaa caagtgatgc ctctaa
//