LOCUS AH002002 6127 bp DNA linear ROD 10-JUN-2016 DEFINITION Mus musculus domesticus strain C.AKR precursor (Lyt-3) gene, complete cds. ACCESSION AH002002 M22065 M22066 M22067 M22068 M22069 M22070 VERSION AH002002.2 KEYWORDS Lyt-3-a gene; Lyt3.1 protein; T-cell surface antigen; cell surface antigen; cell surface glycoprotein; class I gene; integral membrane protein; major histocompatibility complex. SOURCE Mus musculus domesticus (western European house mouse) ORGANISM Mus musculus domesticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 6127) AUTHORS Youn,H.J., Harriss,J.V. and Gottlieb,P.D. TITLE Structure and expression of the Lyt-3a gene of C.AKR mice JOURNAL Immunogenetics 28 (5), 353-361 (1988) PUBMED 3169881 COMMENT On or before Jun 10, 2016 this sequence version replaced M22065.1, M22066.1, M22067.1, M22068.1, M22069.1, M22070.1, AH002002.1. FEATURES Location/Qualifiers source 1..6127 /organism="Mus musculus domesticus" /mol_type="genomic DNA" /strain="C.AKR" /sub_species="domesticus" /db_xref="taxon:10092" /tissue_type="liver" /dev_stage="adult" gene 2188..5889 /gene="Lyt-3" CDS join(2188..2230,2766..3128,3575..3670,3901..3990, 4447..4483,5001..5013) /gene="Lyt-3" /note="precursor" /codon_start=1 /protein_id="AAA39480.1" /translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSSRPFL SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK" sig_peptide join(2188..2230,2766..2785) /gene="Lyt-3" mat_peptide join(2786..3128,3575..3670,3901..3990,4447..4483, 5001..5010) /gene="Lyt-3" /product="unnamed" exon <2188..2230 /gene="Lyt-3" /number=1 intron 2231..>2528 /gene="Lyt-3" /number=1 gap 2529..2628 /estimated_length=unknown intron <2629..2765 /gene="Lyt-3" /number=1 exon 2766..3128 /gene="Lyt-3" /number=2 intron 3129..>3329 /gene="Lyt-3" /number=2 gap 3330..3429 /estimated_length=unknown intron <3430..3574 /gene="Lyt-3" /number=2 exon 3575..3670 /gene="Lyt-3" /number=3 intron 3671..>3730 /gene="Lyt-3" /number=3 gap 3731..3830 /estimated_length=unknown intron <3831..3900 /gene="Lyt-3" /number=3 exon 3901..3990 /gene="Lyt-3" /number=4 intron 3991..>4127 /gene="Lyt-3" /number=4 gap 4128..4227 /estimated_length=unknown intron <4228..4446 /gene="Lyt-3" /number=4 exon 4447..4483 /gene="Lyt-3" /number=5 intron 4484..>4778 /gene="Lyt-3" /number=5 gap 4779..4878 /estimated_length=unknown intron <4879..5000 /gene="Lyt-3" /number=5 exon 5001..>5889 /gene="Lyt-3" /number=6 regulatory 5885..5889 /regulatory_class="polyA_signal_sequence" /gene="Lyt-3" BASE COUNT 1441 a 1477 c 1319 g 1390 t ORIGIN 1 aagctttcat ctttcttact ctcctctcta gccctccttc tctctctttc ttcccccctc 61 tctctacgtg gccacggcgg cttctctccc tctttctacc ttctctcttt ctccctgcct 121 ttctacaata aagctctaaa agcattaaaa aaaagtagaa taaaacagat ttgtttacga 181 ttagttatca gtaaacgatt gctttgtaca agtgttccat aggcctatac ctggggatgt 241 gggaaagttt gaggggtagg aagggatcac aagcaggaaa gggttaagaa gtcctggagg 301 ggtagcggca gggggatcaa gagttgagag tcatcctggg cctaaaaccc ctgctccaaa 361 acccacagag gctatttact aaggacatat gttgaacagt tccatctctg aggaataact 421 acattcaaca aaaagagcag ttaccaggtt ttggcacacg cggaagatgg ggagcgatca 481 taccatccat tcctcggcag acatactgtg acctctcttg gaccactttg tgatctgtgc 541 gttttacgtt gattttgaga gctactactg tgtggttttc ctaggactac ctatgctgtg 601 tacatctggc ccttagcaga ttctcctggg aacagataag aggtatggtg gagaccagcc 661 ggactacgag ggcagcgctt aggacatgac cgtttccttc tttgtctcca gaatctctgg 721 actcaaaagc ctcagctttt gcccctgtca ccaggaactg agggagtcgg atggaaagaa 781 taaggatttg gacactgagg ggcctgtgtc tcgaccccac tgccagcttt agcaccactg 841 gttaccccat tcactcttct gaaactcaag cgcacaatgt gttggctgca gggccggcct 901 agatgacact ccggcctaga tgacactcgc aatctttttt ttttttttct ttttgaggca 961 gggcttctct gtgtagccct ggctgtcctg gaactcactc tgtagatcaa gctggcctcg 1021 aactcagaaa tccactggga tggatttttg ataggatctc tctatgaagc cctgttgcct 1081 tgaactcact gtgtatacca ggctggcccc aaacttgttt tagcccactt gtctcccttc 1141 caagtctgcg gttacctgat gcacgcttag ctcttcttct gtggtggatg tcccccacag 1201 cccttcccag cctccctctc gccagcagac agatcaccaa ggatccagtt tccctggaca 1261 gcagctctct caactcacct ctgccagcct ccacaggcct ccccgttctt catgggttct 1321 tgatggggct ttgatctcaa aactgatgaa gaagcctcag ggcatacagc actgtaaggc 1381 agggcagggg aggggagaca tacagacacc ccagtccgta ggctctaggt ccaggtttgg 1441 ctttgctcac tttcaggcaa ggtctgagcc cctctgtggc accccagctt gcctctctcc 1501 ctcctttctc tctgtgttgg ctaacttccc ttcctccctt acaagggatc tccatcactc 1561 cagggccagc tggactctga actgggaggt cttcataact gttttccttg ctgagacaca 1621 cacacacaca cacacacaca cacacacaca cacacacacg taaagcctct gtctcctgcc 1681 accacgtgtt ccctaccaca atggactgtg tcctcaaacc aagatgaacc cctcctccag 1741 ctgctcagaa agaacgaatg taaagacgtg tctgaattag ggccaagctt cacaaaacca 1801 tgaggcctgg cgcatgctgg cctctgtgac tcagttgtcc caaggtatca gggttctgtc 1861 ccgagctccc ccctgggcaa gaggcatcac acaggtgcaa ccccttggca tgactgagtc 1921 tgagatctat cacttcctct caccagaaaa caagagtcct ggtgggctct ttgaaaagtc 1981 aaggctttga tgctgtatag gatgaagatg aaggcactcc atacacacac acacacacac 2041 acacacacat cacgattccg cccctgccct ggtggccccg cctcttagct cacttacgtt 2101 ctggtgcccc acccgcccaa gctggctcct aacctacctt tcagttgaca gagcactgag 2161 gggaacagtg tccccaaaag cgccaagatg cagccatggc tctggctggt cttcagtatg 2221 aagctggcag gtaagaccca gagtggggct accccaatct gcactagagc aaggaactta 2281 ggcctggtat ctcagcaaca ggaggaatag acaggcgctg ggctgtgaga acaggggagg 2341 ccggtacagg aggaccctga acccggaatg gagattcctt ctcactaccc agagaggtct 2401 gagacgccca gggcagaagt cacctctgtc ctacagcctg aactaaaagg gaaggaagga 2461 aaaaatggaa gaaagaaaag gaaagagaga gatctaaaac cgaaggggaa atgttcaggg 2521 tgcctaccnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2581 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnntt ctcaagtagc 2641 ccaggctggc cttgaactca ctaggcaacc aaacttgaag ttctggtcct gtacttccac 2701 ccacagagtg ctaagattgt gtgtgtatag caacagcctg gttgatgtct tctggtttct 2761 tgtagctctc tggagcagct ctgccctcat tcagacccct tcgtccctgc tggttcaaac 2821 caaccatacg gcaaagatgt cctgtgaggt taaaagcatc tctaagttaa caagcatcta 2881 ctggctgcgg gagcgccagg accccaagga caagtacttt gagttcctgg cctcctggag 2941 ttcttccaaa ggagttttgt atggtgaaag tgtggacaag aaaagaaata taattcttga 3001 gtcttcagac tcaagccggc cctttctcag tatcatgaat gtgaagccag aggacagtga 3061 cttctacttc tgcgcgacgg ttgggagccc caagatggtc tttgggacag ggacgaagct 3121 gactgtgggt aagaatgttc tcaaggctgt gaatgagcac acacacacac acatgtacac 3181 acatgtgcgc acacacatac acacacatgc ttgttcatac agatgtacac tcacatgcac 3241 acatacacat gtgattgcac acatatgcac acacacactc tcacaccggg cactggagct 3301 gcctactctc agtgagcctc actctgcagn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3421 nnnnnnnnng aattcttgta ctctgtgacc tgaaattctg tggcagccaa ggcaacaatc 3481 atgagggcat caatgcctag aagaaaggca cacagtctgt ctgtaagtcc tgctgtttac 3541 ctgactaaga tataggtctc gcttctttct atagttgatg tccttcctac aactgcccca 3601 accaagaaga ctaccctgaa gatgaagaag aagaagcaat gcccgttccc ccacccagag 3661 acccagaagg gtaagttttc cattgttgca ctcacataaa aggtgctttc cactttcctt 3721 tcctccctcc nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gggaggaggg 3841 gctgctcctt gctgtgtccg agtcggtgtt gcatgtgtgt gtcatgtgtg tctttttcag 3901 gcctgacatg cagccttacc accctcagcc tgctggtagt ctgcatcctg cttctgctgg 3961 cattcctcgg agtggccgtc tacttttact gtgagtcagt gcctgcggga cattgaaggg 4021 cccccacttt ctacctgaag tgtgtgtata ctaggagttc tttgttcact aaaatagcag 4081 aataaatagt aaacctaccg ccagcaaacc ttatggctta acagcagnnn nnnnnnnnnn 4141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4201 nnnnnnnnnn nnnnnnnnnn nnnnnnngaa tcatggaatg gatgactgag taatttttaa 4261 acacttcaaa cctatataag caagcaacaa aagtgagaag tgtgaggaat ctggggacca 4321 ccctagcacc ccagaagaag ccttgggcgt tggctaacca tgctgccttc ctctcgggct 4381 ctgaggtttt gatgccagtg atccaccaac cagcgctgac ttgtttgtct ctctctgctc 4441 ttccaggtgt gcggaggaga gcccgaattc acttcatgaa acagtaagtg ctgttctcca 4501 aaaagtcacg aactcggggg cctgagagtt tggatgactt gacagagggt ttgcctagcg 4561 atcccctgca tcacataaac caagatcatg gcttactcca agcacgcctt taaacccaaa 4621 agttgggagg aagaagcagg cgatttctgt gagtttaagg ctagcctggt ctacatagtg 4681 agccttagga cagccagggc tacagagaga gagagagaga ccctgactaa agaaaaagga 4741 agttcccagt catcctcagt tacactgaaa gtccaaggnn nnnnnnnnnn nnnnnnnnnn 4801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4861 nnnnnnnnnn nnnnnnnnga gctctcagcc ccaggatgcc cacctcttcc tccatctgtc 4921 attgcttttg ctataagaaa tatagcaaaa gtgtcactgg cctgaaaata agagtcttac 4981 aatatgctgt tgtttcccag gtttcacaaa tgatcagcgc ccacaacact gatagcctgc 5041 tagaataaaa ggactgtaac tcaatcaaag caagatctgg actagtgaga gacagcgcat 5101 tcaggactgg agaggccctt gcccttgctc aagctgcctg ctttgaactg ctgcaagctc 5161 tgtgtgtggt ttggggtctc acaaggaagg cctcagaacc caagctcacg cacagagtgg 5221 ctgaagaacc aagaactccc acgccaccat gtactcttct tggactgggc cttggacagt 5281 gccttccagc cactgtcttt gtcagttgct tggtaggaca gccttattga ctctttggcc 5341 tttcatggaa aagagctagc cgggcagccc tggagaagac tgcaaatcct cacacagaga 5401 agccacctca tgaataaggt ttcctgcaaa cagtttctgg gctctcagca gccatcttac 5461 tttctcaggc cttgccgtgg gtttgggagc gcgttggctc aggagacaga cttctacttc 5521 atctcctagt aggaagtttc ttaagcttca cttcttctct ctcgtggctt atatatttct 5581 tctctcactc tctgcccttt taatgaaaat gttttggcta taaaaataaa gtcctgccgg 5641 gcatggtggt gcatgccttt aatcccagca ctcaggaggc agaggcaggc ggatctctga 5701 gttcgaggcc agcctggtct acagagtgag ttccaggaca gccaaggcta cagagaaacc 5761 ctgtctcaaa aaaacacaaa aacaaaaaca aaaaaacaaa aaacaaaaaa caaaatatag 5821 tcctatgtta aagacctcag acaagctagg agtgacaagg gctgggaatg taggactcca 5881 gtctaataat gcacaaggtc ctgggttcag tcaccacatg ggtggggtgg gagaaaggag 5941 ggtgagttca ttttgtgtgt tctcatctta catctaaaac tctcatttgg ccagattcat 6001 tgtgcccaaa cttgaattgt ggatgaagag attaggaaat acctacagtg atactagaag 6061 ccctttcaat agaaaagaac aggtgtttgt ttcagccgtt ggagggcctt gaagtctgtc 6121 tttaggg //