LOCUS HUMMHDQAR 1030 bp mRNA linear HUM 07-JAN-1995 DEFINITION Human MHC class II HLA-DQ-alpha (DR2-DQw1/DR4 DQw3) mRNA, partial cds, clone ROF1.1-alpha. ACCESSION M20431 VERSION M20431.1 KEYWORDS cell surface glycoprotein; class II gene; integral membrane protein; major histocompatibility complex. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1030) AUTHORS Lock,C.B., So,A.K., Welsh,K.I., Parkes,J.D. and Trowsdale,J. TITLE MHC class II sequences of an HLA-DR2 narcoleptic JOURNAL Immunogenetics 27 (6), 449-455 (1988) PUBMED 3259543 COMMENT Original source text: Human (haplotype DR2-DQw1/DR4 DQw3) B-lymphoblastoid cell line, cDNA to mRNA, clone ROF1.1-alpha, from a 58 year old male (ROF) with narcolepsy. FEATURES Location/Qualifiers source 1..1030 /db_xref="H-InvDB:HIT000194727" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /map="6p21.3" gene 1..1030 /gene="HLA-DQA1" mRNA <1..1030 /gene="HLA-DQA1" /note="MHC HLA-DQA mRNA; G00-120-638" CDS <1..702 /gene="HLA-DQA1" /note="MHC HLA-DQ-alpha chain precursor old gene name 'HLA-DQA'" /codon_start=1 /protein_id="AAA59758.1" /db_xref="GDB:G00-120-638" /translation="GEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYVDLERKE TAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSKSPVT LGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPS ADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII QGLRSVGASRHQGPL" sig_peptide <1..3 /gene="HLA-DQA1" /note="MHC HLA-DQA-alpha chain signal peptide; G00-120-638" mat_peptide 4..699 /gene="HLA-DQA1" /product="MHC HLA-DQA-alpha chain; G00-120-638" BASE COUNT 235 a 275 c 231 g 289 t ORIGIN Chromosome 6p21.3. 1 ggtgaagaca ttgtggctga ccacgttgcc tcttgtggtg taaacttgta ccagttttac 61 ggtccctctg gccagtacac ccatgaattt gatggagatg agcagttcta cgtggacctg 121 gagaggaagg agactgcctg gcggtggcct gagttcagca aatttggagg ttttgacccg 181 cagggtgcac tgagaaacat ggctgtggca aaacacaact tgaacatcat gattaaacgc 241 tacaactcta ccgctgctac caatgaggtt cctgaggtca cagtgttttc caagtctccc 301 gtgacactgg gtcagcccaa caccctcatt tgtcttgtgg acaacatctt tcctcctgtg 361 gtcaacatca catggctgag caatgggcag tcagtcacag aaggtgtttc tgagaccagc 421 ttcctctcca agagtgatca ttccttcttc aagatcagtt acctcacctt cctcccttct 481 gctgatgaga tttatgactg caaggtggag cactggggcc tggaccagcc tcttctgaaa 541 cactgggagc ctgagattcc agcccctatg tcagagctca cagagactgt ggtctgtgcc 601 ctggggttgt ctgtgggcct catgggcatt gtggtgggca ctgtcttcat catccaaggc 661 ctgcgttcag ttggtgcttc cagacaccaa gggccattgt gaatcccatc ctggaaggga 721 aggtgcatcg ccatctacag gagcagaaga atggacttgc taaatgacct agcactattc 781 tctggcccga tttatcatat cccttttctc ctccaaatat ttctcctctc accttttctc 841 tgggacttaa gctgctatat cccctcagag ctcacaaatg cctttacatt ctttccctga 901 cctcctgatt ttttttttct tttctcaaat gttacctaca atacatgcct ggggtaagcc 961 acccggctac ctaattcctc agtaacctcc atctaaaatc tccaaggaag caataaattc 1021 cttttatgag //