LOCUS HUMCOLXVA1 5161 bp mRNA linear HUM 31-DEC-1994
DEFINITION Homo sapiens alpha-1 type XV collagen mRNA, complete cds.
ACCESSION L25286
VERSION L25286.1
KEYWORDS alpha-1 type XV collagen.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5161)
AUTHORS Myers,J.C., Kivirikko,S., Gordon,M.K., Dion,A.S. and
Pihlajaniemi,T.
TITLE Identification of a previously unknown human collagen chain, alpha
1(XV), characterized by extensive interruptions in the
triple-helical region
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89 (21), 10144-10148 (1992)
PUBMED 1279671
REFERENCE 2 (bases 1 to 5161)
AUTHORS Kivirikko,S., Heinamaki,P., Rehn,M., Honkanen,N., Myers,J.C. and
Pihlajaniemi,T.
TITLE Primary structure of the alpha 1 chain of human type XV collagen
and exon-intron organization in the 3' region of the corresponding
gene
JOURNAL J. Biol. Chem. 269 (7), 4773-4779 (1994)
PUBMED 8106446
COMMENT Original source text: Homo sapiens (tissue library: Clontech bases
955-5167) umbilical cord (bases 1-954) cDNA to mRNA.
FEATURES Location/Qualifiers
source 1..5161
/db_xref="H-InvDB:HIT000192614"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/tissue_type="umbilical cord (bases 1-954)"
/tissue_lib="Clontech bases 955-5167"
gene 1..5161
/gene="COL15A1"
5'UTR 1..89
/gene="COL15A1"
/note="putative"
/citation=[2]
CDS 90..4256
/gene="COL15A1"
/note="putative"
/citation=[1]
/citation=[2]
/codon_start=1
/product="alpha-1 type XV collagen"
/protein_id="AAA58429.1"
/translation="MAPRRNNGQCWCLLMLLSVSTPLPAVTQTRGATETASQGHLDLT
QLIGDPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPSTFFRDFAIRLVVKPSST
RGGVLFAITDAFQKVIYLGLRLSGVEDGHQRIILYYTEPGSHVSQEAPAFSVPVMTHR
WNRFAMIVQGEEVTLLVNCEEHSRIPFQRSSQALAFESSAGIFMGNAGATGLERFTGS
LQQLTVHPDPRTPEELCDPEESSASGETSGLQEADGVAEILEAVTYTQASPKEAKVEP
INTPPTPSSPFEDMELSGEPVPEGTLETTNMSIIQHSSPKQGSGEILNDTLEGVHSVD
GDPITDSGSGAGAFLDIAEEKNLAATAAGLAEVPISTAGEAEASSVPTGGPTLSMSTE
NPEEGVTPGPDNEERLRATAAGEAEALASMPGEVEASGVAPGELDLSMSAQSLGEEAT
VGPSSEDSLTTAAAATEVSLSTFEDEEASGVPTDGLAPLTATMAPERAVTSGPGDEED
LAAATTEEPLITAGGEESGSPPPDGPPLPLPTVAPERWITPAQREHVGMKGQAGPKGE
KGDAGEELPGPPEPSGPVGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPP
GPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEGQPGVDGATGLPGMKGEKG
ARGPNGSVGEKGDPGNRGLPGPPGKKGQAGPPGVMGPPGPPGPPGPPGPGCTMGLGFE
DTEGSGSTQLLNEPKLSRPTAAIGLKGEKGDRGPKGERGMDGASIVGPPGPRGPPGHI
KVLSNSLINITHGFMNFSDIPELVGPPGPDGLPGLPGFPGPRGPKGDTGLPGFPGLKG
EQGEKGEPGAILTEDIPLERLMGKKGEPGMHGAPGPMGPKGPPGHKGEFGLPGRPGRP
GLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVINIKGAIFPIPVRPHCKMPVDTA
HPGSPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKGEN
GDKGFKGEKGEKGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPGPPG
FGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQ
KAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPADSPPPPALSSNPHQLLPP
PNPISSANYEKPALHLAALNMPFSGDIRADFQCFKQARAAGLLSTYRAFLSSHLQDLS
TIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNMHIPIYSFDGRDIMTDPSWPQ
KVIWHGSSPHGVRLVDNYCEAWRTADTAVTGLASPLSTGKILDQKAYSCANRLIVLCI
ENSFMTDARK"
sig_peptide 90..164
/gene="COL15A1"
/note="putative"
/citation=[2]
mat_peptide 165..4253
/gene="COL15A1"
/product="alpha-1 type XV collagen"
/note="putative; label: mat-peptide"
/citation=[1]
/citation=[2]
3'UTR 4254..5161
/gene="COL15A1"
/note="putative"
/citation=[2]
regulatory 4407..4412
/regulatory_class="polyA_signal_sequence"
/gene="COL15A1"
/note="putative; label: polyA_site"
/citation=[2]
regulatory 4631..4636
/regulatory_class="polyA_signal_sequence"
/gene="COL15A1"
/note="putative; label: polyA_site"
/citation=[2]
regulatory 4913..4918
/regulatory_class="polyA_signal_sequence"
/gene="COL15A1"
/note="putative; label: polyA_site"
/citation=[2]
regulatory 5126..5131
/regulatory_class="polyA_signal_sequence"
/gene="COL15A1"
/note="putative; label: polyA_site"
/citation=[2]
polyA_site 5161
/gene="COL15A1"
BASE COUNT 1254 a 1420 c 1363 g 1124 t
ORIGIN
1 ccagcgcctc acgacccttc gtcctccgct aagctccaac gctctgctcg actagccgcg
61 cgccttccgg ggctccgcag acccgcgaga tggcaccaag gaggaacaac gggcagtgct
121 ggtgtctgct gatgctgctc tcggtctcca cgcccctccc tgctgtcacc cagacccgcg
181 gtgcgacaga gactgcttcc cagggtcacc tggacctcac gcagctcatc ggtgacccgc
241 tgccctcgtc cgtatccttt gtcacaggct atggtggctt cccggcctac agtttcgggc
301 ctggtgccaa tgttggccgc ccagccagga ctctcatccc atccaccttc ttcagggact
361 tcgccatcag gctcgtggtg aagcccagca gcacccgtgg tggcgtgctc ttcgccatca
421 ctgacgcctt ccagaaggtc atctacctgg gcctgcggct ctcaggtgtg gaggacggcc
481 accagcggat catcctctac tacacggagc caggctccca tgtgtcccaa gaagctcctg
541 ccttctcggt gcctgtgatg acccacaggt ggaaccgctt cgccatgatt gtccagggtg
601 aggaagtgac cctcctcgtg aactgtgagg agcacagccg catccccttc cagcggtcct
661 cccaggcttt ggcttttgag tccagcgctg gaatcttcat gggcaatgca ggagctacag
721 ggctcgagag attcactggc tccctccagc agctcaccgt gcaccccgac cccaggactc
781 ccgaggagct gtgtgaccct gaagagtcct cggcatctgg agagaccagt gggctgcagg
841 aggcagacgg agtagctgag atcttagaag ccgtcaccta cactcaagcc tcgcccaaag
901 aagcaaaagt tgaacccata aacacacctc caactccatc ctcccccttt gaagacatgg
961 aactttctgg tgaacctgta cccgagggga ccctggaaac caccaacatg agcatcatcc
1021 agcacagcag ccccaaacaa gggtctggtg agatcctgaa tgacacactg gagggggttc
1081 attctgtgga tggtgacccc attactgaca gcggctcagg ggctggggcc ttccttgaca
1141 ttgctgaaga aaagaattta gcagcaacag cagcggggct ggccgaggtg cccatcagca
1201 ctgctggaga agcagaggcc agcagtgtgc ccaccggggg accaaccctc tctatgtcca
1261 cggagaaccc agaggaaggg gtcactccag gtccagataa tgaagagcgt ttacgagcaa
1321 cagcagcagg ggaggccgag gcactcgcca gcatgcctgg ggaagtggag gccagtggtg
1381 tggcccccgg ggagctggac ctctccatgt ccgcccagag cctcggggaa gaggccactg
1441 tgggtccaag cagtgaagac agtttaacaa cagctgcagc tgcaaccgaa gtgtccctca
1501 gtacttttga ggatgaggaa gccagtgggg tccccacaga tggcctggct cccctcacag
1561 ccaccatggc ccctgagcgg gcagtcactt ctggtcctgg tgatgaagaa gacttggcag
1621 cagccacaac agaggagccc ctcatcacag ctgggggtga agagtccggc agccctcccc
1681 ctgatgggcc accgctgccc ctgcccacag tggctcctga aagatggatc actccagctc
1741 aaagagaaca tgtgggaatg aaaggacagg ctgggcccaa aggagaaaag ggtgatgctg
1801 gggaggagct tcctggccct cctgaacctt ctgggcctgt tggacccacg gcaggagcag
1861 aagcagaggg ctctggccta ggctggggct cggacgtcgg ctctggctct ggtgacctgg
1921 tgggcagtga gcagctgctg agaggtcctc caggaccccc agggccacct ggcttacctg
1981 ggattccagg aaaaccagga actgatgttt tcatgggacc ccctggatct cctggagagg
2041 atggacctgc tggtgaacct gggcccccgg gccctgaggg acagcctgga gttgatggag
2101 ccaccggcct tcccgggatg aaaggggaga agggagcaag agggcctaat ggctcagttg
2161 gtgaaaaggg tgaccctggc aacagaggct tacctggacc cccggggaaa aagggacaag
2221 ctggccctcc tggggtcatg ggacccccag ggcctcctgg accccctggg cccccaggcc
2281 ctggatgcac aatgggactt ggattcgagg ataccgaagg ctctggaagc acccagctat
2341 tgaatgaacc caaactctcc agaccaacgg ctgcaattgg tctcaaagga gagaaaggag
2401 accggggacc caagggagaa agggggatgg atggagccag tattgtggga ccccctgggc
2461 cgagagggcc acctgggcac atcaaggtct tgtctaattc cttgatcaat atcacccatg
2521 gattcatgaa tttctcggac attcctgagc tggtggggcc tccggggccg gacgggttgc
2581 ctgggctgcc aggatttcca ggtcctagag gaccaaaagg tgacactggt ttacctggct
2641 ttccaggact aaaaggagaa cagggcgaga agggagagcc gggtgccatc ctgacagagg
2701 acattcctct ggaaaggctg atggggaaaa agggtgaacc tggaatgcat ggagccccag
2761 gaccaatggg gcccaaagga ccaccaggac ataaaggaga atttggcctt cccgggcgac
2821 ctggtcgccc aggactgaat ggcctcaagg gtaccaaagg agatccaggg gtcattatgc
2881 agggcccacc tggcttacct ggccctccag gcccccctgg gccacctgga gctgtgatta
2941 acatcaaagg agccattttc ccaatacccg tccgaccaca ctgcaaaatg ccagttgata
3001 ctgctcatcc tgggagtcca gagctcatca cttttcacgg tgttaaagga gagaaaggat
3061 cctggggtct tcctggctca aagggagaaa aaggcgacca gggagcccag ggaccaccag
3121 gtcctccact tgatctagct tacctgagac actttctgaa caacttgaag ggggagaatg
3181 gagacaaggg gttcaaaggt gaaaaaggag aaaaaggaga cattaatggc agcttcctta
3241 tgtctgggcc tccaggcctg cccggaaatc caggcccggc tggccaaaaa ggggagacag
3301 tcgttgggcc ccaaggaccc ccaggtgctc ctggtctgcc tgggccacct ggctttggaa
3361 gacctggtga tcctgggcca ccggggcccc cggggccacc aggacctcca gctatcctgg
3421 gagcagctgt ggcccttcca ggtccccctg gccctccagg acagccaggg cttcccggat
3481 ccagaaacct ggtcacagca ttcagcaaca tggatgacat gctgcagaaa gcgcatttgg
3541 ttatagaagg aacattcatc tacctgaggg acagcactga gtttttcatt cgtgttagag
3601 atggctggaa aaaattacag ctgggagaac tgatccccat tcctgccgac agccctccac
3661 cccctgcgct ttccagcaac ccacatcagc ttctgcctcc accaaaccct atttcaagtg
3721 ccaattatga gaagcctgct ctgcatttgg ctgctctgaa catgccattt tctggggaca
3781 ttcgagctga ttttcagtgc ttcaagcagg ccagagctgc aggactgttg tccacctacc
3841 gagcattctt atcttcccat ttgcaagatc tgtccaccat tgtgaggaaa gcagagagat
3901 acagccttcc catagtgaac ctcaagggcc aagtactttt taataattgg gactcaattt
3961 tttctggcca cggaggtcag ttcaatatgc atattccaat atactccttt gatggtcgag
4021 acataatgac agatccttct tggccccaga aagtcatttg gcatggctcc agcccccatg
4081 gcgtccgcct tgtggataac tactgtgaag catggcgaac cgcggacaca gcggtcacgg
4141 gacttgcctc cccgctgagc acggggaaga ttctggacca gaaagcatac agctgtgcta
4201 atcggctaat tgtcctatgt atcgaaaaca gtttcatgac agacgctagg aagtaatggc
4261 cttctgatga ttcttaaaga gttttcaatt ttttcttatg tgaagagttg acactgaaat
4321 ctaaaatgtt taattgttgt aaatattaca gttttttttt ttttactaca tattctttac
4381 aacagcaacc aaagaaaaca tacctcaata cactcaaaac tgaagacata gaggactcag
4441 atcaaagaca aaatctgatc catatattgg tgctagattc tgcaggaaac cccagcagtg
4501 tgaacgcatc ccaacatagg ttaagagcaa gttgaaaaca aaggccagat tctgccactg
4561 catccttcag acagttatat cctcctttta aaccattgtt gttgagtgta agatgtcctt
4621 catgttttct tataaagtca gtgtttagaa atgttaccct ttctaagtta tatacagatc
4681 aaatgctttt ttctttcacg tacatccatc atttgcaact gctgttcgta cacagaaaca
4741 ggactgctca aatgatccta tttgtatttt ctgatgctat cagactctaa tgtttttttc
4801 cctaaaatat tattgccatc atgctttagg aatttttata tttttacaca atcatatttt
4861 agtatggtgt ctgtttatgt aactctgact tgctggaaaa gttgaaactc caaataatct
4921 gaaactagaa aagaaatagc acataattac taccttcccc ttggcggctc tcctccccca
4981 acccccaccc cacaatttta tgacttccat ttggcaattg ttgaattata actgcgactg
5041 aaacaaacag gttcatagag atgaattttc tgagaaacat atatctacat gttgtataat
5101 tggatttttt ttccatgtaa gtgaacataa aaacatcttt tccggggtgc tttcttcatt
5161 t
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