LOCUS KM655700 1605 bp mRNA linear HTC 29-JUL-2015
DEFINITION Danio rerio Ephb3a mRNA, partial cds.
ACCESSION KM655700
VERSION KM655700.1
KEYWORDS HTC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1605)
AUTHORS Gao,X., Metzger,U., Panza,P., Mahalwar,P., Alsheimer,S., Geiger,H.,
Maischein,H.M., Levesque,M.P., Templin,M. and Sollner,C.
TITLE A Floor-Plate Extracellular Protein-Protein Interaction Screen
Identifies Draxin as a Secreted Netrin-1 Antagonist
JOURNAL Cell Rep 12 (4), 694-708 (2015)
PUBMED 26190107
REFERENCE 2 (bases 1 to 1605)
AUTHORS Gao,X., Metzger,U., Panza,P., Mahalwar,P., Alsheimer,S., Geiger,H.,
Maischein,H.M., Levesque,M.P., Templin,M. and Sollner,C.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2014) Genetics, Max Planck Institute for
Developmental Biology, Spemannstrasse 35, Tuebingen, BW 72076,
Germany
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1605
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
CDS 1..>1605
/codon_start=1
/product="Ephb3a"
/protein_id="AJG06046.1"
/translation="MDYSLLLYSLWVPVILAVEETLMDSRWATTELAWTTYPESGWEE
VSGYDDHLSPIRTYQVCNVLEPNQNNWLRTDFIPRRGVLRVYVELKFSVRDCGSIPNI
PGSCKETFNLFYYESDGDMATASSPPWRENPYVKVDTIAPDESFSLLESGIVNTKVRS
FGPLSKAGFYLAFQDLGACMSLISARVFFKKCSTSIANFAVFPETATGAEATSLVIAA
GACVPNAAEESVPLKLYCNGDGEWMVPVGACTCMPGFEPAKKDTQCQACTPGTFKSKQ
GEGSCMPCPSNSRASSRASSVCPCQSGYYRADSDLPDTACTTVPSAPLNVISSVNETS
VSLEWSEPRDSGGRGDVVYNVVCKKCLHDGGSCARCDDNVEVSPRRLGLAERQAAVRN
LQAHTHYSFEIQAVNGVSPKSPSSPQYTTVNITTNQAAPSAVPTVHLMRATAGTLSLS
WLPPEQPNGVILDYEIKYQERGESFSHTVTAQHTSAKVEGLKAGTVYSVQVRARTVAG
YGRYSNPVDFSTSLYDDPERSVQDLLP"
BASE COUNT 341 a 457 c 448 g 359 t
ORIGIN
1 atggattatt cgctgttatt atacagcctt tgggttcccg ttattctcgc tgttgaggag
61 actcttatgg acagcaggtg ggctactaca gagctggcgt ggaccaccta tcctgaaagc
121 gggtgggagg aagtgagcgg atatgatgac cacttgagcc ccatcaggac ttaccaggtc
181 tgtaacgtgc tggagcccaa tcagaacaac tggctccgta cagacttcat tccccgtcga
241 ggagtcctcc gagtctacgt ggagctcaag ttctctgtgc gggactgtgg cagtattccc
301 aacatccccg gttcctgtaa agagaccttt aatctgttct actatgaatc agacggagac
361 atggccacgg caagcagccc accgtggagg gagaatcctt atgtaaaggt ggacaccatt
421 gccccagatg aaagcttctc gttgctggag tcaggaatcg tcaacaccaa agtacggagc
481 ttcggccctc tttccaaagc tggtttctac ctggccttcc aggacctggg cgcctgcatg
541 tctctgatct cagcccgggt cttctttaaa aagtgctcca cctccattgc caacttcgct
601 gtcttcccag agacggccac tggcgccgag gccacctctc tggtcatcgc tgccggagct
661 tgtgtgccaa acgccgccga ggaatctgtc cctctaaagc tgtactgtaa cggagatggc
721 gaatggatgg ttccagtggg agcctgcacc tgcatgccgg gatttgagcc ggccaagaag
781 gacactcagt gccaggcgtg cactccaggg acctttaagt ccaaacaggg tgagggttct
841 tgtatgccgt gcccttccaa cagccgagcc agctctaggg catccagcgt gtgcccttgt
901 caaagtggct actaccgcgc tgacagcgac ctccctgaca cggcctgcac tactgttccc
961 tcagctccat taaacgtgat ctccagcgtc aacgagactt cggtgtccct cgagtggtcc
1021 gagcctcggg attcgggcgg tcgaggggac gtggtgtata acgtggtgtg taaaaagtgt
1081 cttcacgatg gtggctcttg tgcgcgctgc gatgacaatg tggaggtctc gccgcgtcgc
1141 ctgggtctgg cagagaggca ggcggcagtg aggaatctgc aggcacacac acattacagc
1201 tttgagattc aggctgtgaa cggcgtgtcc cccaagagcc cgtccagccc acagtacacc
1261 actgtcaata tcaccaccaa tcaagcagct ccgtcagcag tccccaccgt ccacttaatg
1321 cgggccacag ctggcactct cagcctctcc tggctgcccc cagagcagcc caatggcgtg
1381 atcctggatt atgagatcaa gtaccaggag aggggagagt ccttctctca tacggtcaca
1441 gctcagcaca cttctgccaa agtggagggt ttgaaggctg gcacggtgta ctctgtgcag
1501 gttcgagctc ggacggtagc tgggtatgga cggtatagca acccggtgga tttcagtaca
1561 agtctttatg atgacccaga gcgctccgta caggatctgc tgcct
//