LOCUS AH005296 2261 bp DNA linear HUM 01-AUG-2016
DEFINITION Homo sapiens green pigment protein (GCP) gene, complete cds.
ACCESSION AH005296 K03490 K03491 K03492 K03493 K03494 M13306
VERSION AH005296.2
KEYWORDS apoprotein; green cone protein; green pigment protein; membrane
protein; opsin.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2261)
AUTHORS Nathans,J., Thomas,D. and Hogness,D.S.
TITLE Molecular genetics of human color vision: the genes encoding blue,
green, and red pigments
JOURNAL Science 232 (4747), 193-202 (1986)
PUBMED 2937147
COMMENT On or before Aug 1, 2016 this sequence version replaced M13306.1,
K03490.1, K03491.1, K03492.1, K03493.1, K03494.1, AH005296.1.
FEATURES Location/Qualifiers
source 1..2261
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
/map="Xq28"
prim_transcript 454..>609
/note="GCP1 mRNA"
gene 495..2189
/gene="GCP"
CDS join(495..599,720..989,1110..1271,1392..1553,1674..1943,
2064..2189)
/gene="GCP"
/note="green pigment protein"
/codon_start=1
/protein_id="AAB59503.1"
/translation="MAQQWSLQRLAGRHPQDSYEDSTQSSIFTYTNSNSTRGPFEGPN
YHIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAE
TVIASTISVVNQVYGYFVLGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFG
NVRFDAKLAIVGIAFSWIWAAVWTAPPIFGWSRYWPHGLKTSCGPDVFSGSSYPGVQS
YMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESESTQKAEKEVTRMVVVMVLA
FCFCWGPYAFFACFAAANPGYPFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL
QLFGKKVDDGSELSSASKTEVSSVSSVSPA"
exon <495..599
/gene="GCP"
/note="green pigment protein; G00-120-622"
/number=1
intron 600..>609
/gene="GCP"
/note="GCP1 intron A"
gap 610..709
/estimated_length=unknown
intron <710..719
/gene="GCP"
/note="GCP1 intron A"
exon 720..989
/gene="GCP"
/note="G00-120-622"
/number=2
variation 921
/gene="GCP"
/note="c in DNA; t in cDNA"
/replace="t"
intron 990..>999
/gene="GCP"
/note="GCP1 intron B"
gap 1000..1099
/estimated_length=unknown
intron <1100..1109
/gene="GCP"
/note="GCP1 intron B"
exon 1110..1271
/gene="GCP"
/note="G00-120-622"
/number=3
variation 1187
/gene="GCP"
/note="a in DNA; g in cDNA"
/replace="g"
variation 1191
/gene="GCP"
/note="a in DNA; c in cDNA"
/replace="c"
variation 1199
/gene="GCP"
/note="c in DNA; g in cDNA"
/replace="g"
intron 1272..>1281
/gene="GCP"
/note="GCP1 intron C"
gap 1282..1381
/estimated_length=unknown
prim_transcript <1382..>1563
/gene="GCP"
/note="GCP1 mRNA"
intron <1382..1391
/gene="GCP"
/note="GCP1 intron C"
exon 1392..1553
/gene="GCP"
/note="G00-120-622"
/number=4
intron 1554..>1563
/gene="GCP"
/note="GCP1 intron D"
gap 1564..1663
/estimated_length=unknown
prim_transcript <1664..>1953
/gene="GCP"
/note="GCP1 mRNA"
intron <1664..1673
/gene="GCP"
/note="GCP1 intron D"
exon 1674..1943
/gene="GCP"
/note="G00-120-622"
/number=5
intron 1944..>1953
/gene="GCP"
/note="GCP1 intron E"
gap 1954..2053
/estimated_length=unknown
prim_transcript <2054..>2189
/gene="GCP"
/note="GCP1 mRNA"
intron <2054..2063
/gene="GCP"
/note="GCP1 intron E"
exon 2064..>2189
/gene="GCP"
/note="green pigment protein; G00-120-622"
/number=6
BASE COUNT 336 a 545 c 473 g 407 t
ORIGIN 160 bp upstream of BstNI site; chromosome Xq28.
1 ttatttagta gaaacggggt ttcaccatgt tagtcaggct ggtcgggaac tcctgacctc
61 aggagatcta cccgccttgg cctcccaaag tgctgggatt acaggcgtgt gccactgtgc
121 ccagccactt ttttttagac agagtcttgg tctgttgccc aggctagagt tcagtggcgc
181 catctcagct cactgcaacc tccgcctccc agattcaagc gattctcctg cctcgacctc
241 ccagtagctg ggattacagg tttccagcaa atccctctga gccgcccccg ggggctcgcc
301 tcaggagcaa ggaagcaagg ggtgggagga ggaggtctaa gtcccaggcc caattaagag
361 atcagatggt gtaggatttg ggagctttta aggtgaagag gcccgggctg atcccactgg
421 ccggtataaa gcgccgtgac cctcaggtga cgcaccaggg ccggctgccg tcggggacag
481 ggctttccat agccatggcc cagcagtgga gcctccaaag gctcgcaggc cgccatccgc
541 aggacagcta tgaggacagc acccagtcca gcatcttcac ctacaccaac agcaactccg
601 tgagccagcn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc tgccctcaga
721 ccagaggccc cttcgaaggc ccgaattacc acatcgctcc cagatgggtg taccacctca
781 ccagtgtctg gatgatcttt gtggtcattg catccgtttt cacaaatggg cttgtgctgg
841 cggccaccat gaagttcaag aagctgcgcc acccgctgaa ctggatcctg gtgaacctgg
901 cggtcgctga cctggcagag accgtcatcg ccagcactat cagcgttgtg aaccaggtct
961 atggctactt cgtgctgggc caccctatgg taagccagtn nnnnnnnnnn nnnnnnnnnn
1021 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1081 nnnnnnnnnn nnnnnnnnnc tccccatagt gtgtcctgga gggctacacc gtctccctgt
1141 gtgggatcac aggtctctgg tctctggcca tcatttcctg ggagagatgg atggtggtct
1201 gcaagccctt tggcaatgtg agatttgatg ccaagctggc catcgtgggc attgccttct
1261 cctggatctg ggtaagggtg cnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1321 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1381 nttctctcca ggctgctgtg tggacagccc cgcccatctt tggttggagc aggtactggc
1441 cccacggcct gaagacttca tgcggcccag acgtgttcag cggcagctcg taccccgggg
1501 tgcagtctta catgattgtc ctcatggtca cctgctgcat caccccactc agcgtaagcc
1561 cccnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnntctccct tagatcatcg
1681 tgctctgcta cctccaagtg tggctggcca tccgagcggt ggcaaagcag cagaaagagt
1741 ctgaatccac ccagaaggca gagaaggaag tgacgcgcat ggtggtggtg atggtcctgg
1801 cattctgctt ctgctgggga ccatacgcct tcttcgcatg ctttgctgct gccaaccctg
1861 gctacccctt ccaccctttg atggctgccc tgccggcctt ctttgccaaa agtgccacta
1921 tctacaaccc cgttatctat gtcgtaagca acannnnnnn nnnnnnnnnn nnnnnnnnnn
1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2041 nnnnnnnnnn nnngtccttc cagtttatga accggcagtt tcgaaactgc atcttgcagc
2101 ttttcgggaa gaaggttgac gatggctctg aactctccag cgcctccaaa acggaggtct
2161 catctgtgtc ctcggtatcg cctgcatgag gtctgcctcc tacccatccc gcccaccggg
2221 gctttggcca cctctccttt ccccctcctt ctccatccct g
//