LOCUS JX093076 1860 bp mRNA linear HUM 08-AUG-2012 DEFINITION Homo sapiens sterile alpha motif domain containing 11 splice variant ASV11 (SAMD11) mRNA, complete cds, alternatively spliced. ACCESSION JX093076 VERSION JX093076.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1860) AUTHORS Jin,G.J. and Shen,H. TITLE Identification and expression analysis of novel alternative splice variants of SAMD11 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1860) AUTHORS Jin,G.J. and Shen,H. TITLE Direct Submission JOURNAL Submitted (21-MAY-2012) State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, 54 Xianlie Road, Guangzhou, Guangdang 510060, China COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 7.10 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1860 /db_xref="H-InvDB:HIT000721891" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" gene 1..1860 /gene="SAMD11" CDS 1..1860 /gene="SAMD11" /note="alternatively spliced" /codon_start=1 /product="sterile alpha motif domain containing 11 splice variant ASV11" /protein_id="AFP36427.1" /translation="MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPVARNLK KERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCS QDGNLPTLISSVHRSRHLVMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSD CFSEKRARSESPQDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAA PAAAPSFSERELPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQA EMFARQQELLRKQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGA LLVLNHGAAPLLALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGAR LWAQDGSEDEPPKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFP YAVSPYFHTGAVGGLSMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGI DGETLPLLTEEHLLTNMGLKLGPALKIRAQVARRLGRVFYVASFPVALPLQPPTLRAP ERELGTGEQPLSPTTATSPYGGGHALAGQTSPKQENGTLALLPGAPDPSQPLC" BASE COUNT 310 a 666 c 618 g 266 t ORIGIN 1 atgtccaagg ggatcctgca ggtgcatcct ccgatctgcg actgcccggg ctgccgaata 61 tcctccccgg tgaaccgggg gcggctggca gacaagagga cagtcgccct gcctgtcgcc 121 cggaacctga agaaggagcg aactcccagc ttctctgcca gcgatggtga cagcgacggg 181 agtggcccca cctgtgggcg gcggccaggc ttgaagcagg aggatggtcc gcacatccgt 241 atcatgaaga gaagagtcca cacccactgg gacgtgaaca tctctttccg agaggcgtcc 301 tgcagccagg acggcaacct tcccaccctc atatccagcg tccaccgcag ccgccacctc 361 gttatgcccg agcatcagag ccgctgtgaa ttccagagag gcagcctgga gattggcctg 421 cgacccgccg gtgacctgtt gggcaagagg ctgggccgct ccccccgtat cagcagcgac 481 tgcttttcag agaagagggc acgaagcgaa tcgcctcaag atctcctgag ggtccggcag 541 gaggtggcgg ctgcagctct gaggggcccc agtggcctgg aagcccacct gccctcctcc 601 acggcaggtc agcgtcggaa gcagggcctg gctcagcacc gggagggcgc cgccccagct 661 gccgccccgt ccttctcgga gagggagctg cctcagccgc cccccttgct gtcgccgcag 721 aatgcccctc acgtcgccct gggcccccat ctcaggcccc ccttcctggg ggtgccctcg 781 gctctgtgcc agaccccagg ctacggcttc ctgccccccg cgcaggcgga gatgttcgcc 841 cggcagcagg agctcctgcg gaagcagaac ctggcccggc tggagctgcc cgccgacctc 901 ctgcggcaga aggagctgga gagcgcgcgc ccacagctgc tggcgcccga gaccgccctg 961 cgccccaacg acggcgccga ggagctgcag cggcgcgggg ccctgctggt gctgaaccac 1021 ggcgcggcgc cactgctggc cctgcccccc caggggcccc cgggctccgg accccccacc 1081 ccgtcccggg actctgcccg gcgagccccc cggaaggggg gtcccggccc tgcctcagcg 1141 cggcccagcg agtccaagga gatgacgggg gctaggctct gggcacaaga tggctcggaa 1201 gacgagcccc ccaaagactc ggacggagag gaccccgaga cggcagctgt tgggtgcagg 1261 gggcccactc cgggccaagc tccagctgga ggggccggcg ccgaggggaa ggggcttttc 1321 ccagggtcca cactgcccct gggcttccct tatgccgtca gcccctactt ccacacaggc 1381 gcggtagggg gactctccat ggatggggag gaggccccag cccctgagga cgtcaccaag 1441 tggaccgtgg atgacgtctg cagcttcgtg gggggcctgt ctggctgtgg agagtacact 1501 cgggtcttca gggagcaggg gatcgacggg gagaccctgc cactgctgac ggaggagcac 1561 ctgctgacca acatggggct gaagctgggg cccgccctca agatccgggc ccaggtggcc 1621 aggcgcctgg gccgagtttt ctacgtggcc agcttccccg tggctctgcc actgcagcca 1681 ccaaccctgc gggccccgga gcgagaactc ggcacaggag agcagccctt gtcccccacg 1741 acggccacgt ccccctatgg agggggccac gcccttgccg gtcaaacttc acccaagcag 1801 gagaatggga ccttggctct acttccaggg gcccccgacc cttcccagcc tctgtgttga //