LOCUS JX093074 1968 bp mRNA linear HUM 08-AUG-2012
DEFINITION Homo sapiens sterile alpha motif domain containing 11 splice
variant ASV9 (SAMD11) mRNA, complete cds, alternatively spliced.
ACCESSION JX093074
VERSION JX093074.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1968)
AUTHORS Jin,G.J. and Shen,H.
TITLE Identification and expression analysis of novel alternative splice
variants of SAMD11
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1968)
AUTHORS Jin,G.J. and Shen,H.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2012) State Key Laboratory of Ophthalmology,
Zhongshan Ophthalmic Center, Sun Yat-sen University, 54 Xianlie
Road, Guangzhou, Guangdang 510060, China
COMMENT ##Assembly-Data-START##
Assembly Method :: DNAstar v. 7.10
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1968
/db_xref="H-InvDB:HIT000721889"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..1968
/gene="SAMD11"
CDS 1..1968
/gene="SAMD11"
/note="alternatively spliced"
/codon_start=1
/product="sterile alpha motif domain containing 11 splice
variant ASV9"
/protein_id="AFP36425.1"
/translation="MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLK
KERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCS
VHRSRHLVMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSES
PQAEALLLPRELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHDLLRVRQEV
AAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERELPQPPPLLSPQ
NAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLRKQNLARLELPA
DLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPLLALPPQGPPGS
GPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEPPKDSDGEDPET
AAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGAVGGLSMDGEEA
PAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEEHLLTNMGLKLG
PALKIRAQVARRLGRVFYVASFPVALPLQPPTLRAPERELGTGEQPLSPTTATSPYGG
GHALAGQTSPKQENGTLALLPGAPDPSQPLC"
BASE COUNT 324 a 706 c 658 g 280 t
ORIGIN
1 atgtccaagg ggatcctgca ggtgcatcct ccgatctgcg actgcccggg ctgccgaata
61 tcctccccgg tgaaccgggg gcggctggca gacaagagga cagtcgccct gcctgccgcc
121 cggaacctga agaaggagcg aactcccagc ttctctgcca gcgatggtga cagcgacggg
181 agtggcccca cctgtgggcg gcggccaggc ttgaagcagg aggatggtcc gcacatccgt
241 atcatgaaga gaagagtcca cacccactgg gacgtgaaca tctctttccg agaggcgtcc
301 tgcagcgtcc accgcagccg ccacctcgtt atgcccgagc atcagagccg ctgtgaattc
361 cagagaggca gcctggagat tggcctgcga cccgccggtg acctgttggg caagaggctg
421 ggccgctccc cccgtatcag cagcgactgc ttttcagaga agagggcacg aagcgaatcg
481 cctcaagcag aggcgctgct gctgccgcgg gagctggggc ccagcatggc cccggaggac
541 cattaccgcc ggcttgtgtc agcactgagc gaggccagca cctttgagga ccctcagcgc
601 ctctaccacc tgggcctccc cagccacgat ctcctgaggg tccggcagga ggtggcggct
661 gcagctctga ggggccccag tggcctggaa gcccacctgc cctcctccac ggcaggtcag
721 cgtcggaagc agggcctggc tcagcaccgg gagggcgccg ccccagctgc cgccccgtcc
781 ttctcggaga gggagctgcc tcagccgccc cccttgctgt cgccgcagaa tgcccctcac
841 gtcgccctgg gcccccatct caggcccccc ttcctggggg tgccctcggc tctgtgccag
901 accccaggct acggcttcct gccccccgcg caggcggaga tgttcgcccg gcagcaggag
961 ctcctgcgga agcagaacct ggcccggctg gagctgcccg ccgacctcct gcggcagaag
1021 gagctggaga gcgcgcgccc acagctgctg gcgcccgaga ccgccctgcg ccccaacgac
1081 ggcgccgagg agctgcagcg gcgcggggcc ctgctggtgc tgaaccacgg cgcggcgcca
1141 ctgctggccc tgccccccca ggggcccccg ggctccggac cccccacccc gtcccgggac
1201 tctgcccggc gagccccccg gaaggggggt cccggccctg cctcagcgcg gcccagcgag
1261 tccaaggaga tgacgggggc taggctctgg gcacaagatg gctcggaaga cgagcccccc
1321 aaagactcgg acggagagga ccccgagacg gcagctgttg ggtgcagggg gcccactccg
1381 ggccaagctc cagctggagg ggccggcgcc gaggggaagg ggcttttccc agggtccaca
1441 ctgcccctgg gcttccctta tgccgtcagc ccctacttcc acacaggcgc ggtaggggga
1501 ctctccatgg atggggagga ggccccagcc cctgaggacg tcaccaagtg gaccgtggat
1561 gacgtctgca gcttcgtggg gggcctgtct ggctgtggag agtacactcg ggtcttcagg
1621 gagcagggga tcgacgggga gaccctgcca ctgctgacgg aggagcacct gctgaccaac
1681 atggggctga agctggggcc cgccctcaag atccgggccc aggtggccag gcgcctgggc
1741 cgagttttct acgtggccag cttccccgtg gctctgccac tgcagccacc aaccctgcgg
1801 gccccggagc gagaactcgg cacaggagag cagcccttgt cccccacgac ggccacgtcc
1861 ccctatggag ggggccacgc ccttgccggt caaacttcac ccaagcagga gaatgggacc
1921 ttggctctac ttccaggggc ccccgaccct tcccagcctc tgtgttga
//