LOCUS JX093066 2100 bp mRNA linear HUM 08-AUG-2012
DEFINITION Homo sapiens sterile alpha motif domain containing 11 splice
variant ASV1 (SAMD11) mRNA, complete cds, alternatively spliced.
ACCESSION JX093066
VERSION JX093066.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2100)
AUTHORS Jin,G.J. and Shen,H.
TITLE Identification and expression analysis of novel alternative splice
variants of SAMD11
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2100)
AUTHORS Jin,G.J. and Shen,H.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2012) State Key Laboratory of Ophthalmology,
Zhongshan Ophthalmic Center, Sun Yat-sen University, 54 Xianlie
Road, Guangzhou, Guangdang 510060, China
COMMENT ##Assembly-Data-START##
Assembly Method :: DNAstar v. 7.10
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2100
/db_xref="H-InvDB:HIT000721881"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..2100
/gene="SAMD11"
CDS 1..2100
/gene="SAMD11"
/note="alternatively spliced"
/codon_start=1
/product="sterile alpha motif domain containing 11 splice
variant ASV1"
/protein_id="AFP36417.1"
/translation="MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLK
KERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCS
QDGNLPTLISSVHRSRHLVMPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSD
CLSEKRARSESPQAEALLLPRELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLP
SHDLLRVRQEVAAAALRGPSGLEAHLPSSTAGQRRKQGLAQHREGAAPAAAPSFSERE
LPQPPPLLSPQNAPHVALGPHLRPPFLGVPSALCQTPGYGFLPPAQAEMFARQQELLR
KQNLARLELPADLLRQKELESARPQLLAPETALRPNDGAEELQRRGALLVLNHGAAPL
LALPPQGPPGSGPPTPSRDSARRAPRKGGPGPASARPSESKEMTGARLWAQDGSEDEP
PKDSDGEDPETAAVGCRGPTPGQAPAGGAGAEGKGLFPGSTLPLGFPYAVSPYFHTGA
VGGLSMDGEEAPAPEDVTKWTVDDVCSFVGGLSGCGEYTRVFREQGIDGETLPLLTEE
HLLTNMGLKLGPALKIRAQVRRWGVRSGSPDHSWAESSGWVCDSPHQAISLQVARRLG
RVFYVASFPVALPLQPPTLRAPERELGTGEQPLSPTTATSPYGGGHALAGQTSPKQEN
GTLALLPGAPDPSQPLC"
BASE COUNT 351 a 750 c 699 g 300 t
ORIGIN
1 atgtccaagg ggatcctgca ggtgcatcct ccgatctgcg actgcccggg ctgccgaata
61 tcctccccgg tgaaccgggg gcggctggca gacaagagga cagtcgccct gcctgccgcc
121 cggaacctga agaaggagcg aactcccagc ttctctgcca gcgatggtga cagcgacggg
181 agtggcccca cctgtgggcg gcggccaggc ttgaagcagg aggatggtcc gcacatccgt
241 atcatgaaga gaagagtcca cacccactgg gacgtgaaca tctctttccg agaggcgtcc
301 tgcagccagg acggcaacct tcccaccctc atatccagcg tccaccgcag ccgccacctc
361 gttatgcccg agcatcagag ccgctgtgaa ttccagagag gcagcctgga gattggcctg
421 cgacccgccg gtgacctgtt gggcaagagg ctgggccgct ccccccgtat cagcagcgac
481 tgcctttcag agaagagggc acgaagcgaa tcgcctcaag cagaggcgct gctgctgccg
541 cgggagctgg ggcccagcat ggccccggag gaccattacc gccggcttgt gtcagcactg
601 agcgaggcca gcacctttga ggaccctcag cgcctctacc acctgggcct ccccagccac
661 gatctcctga gggtccggca ggaggtggcg gctgcagctc tgaggggccc cagtggcctg
721 gaagcccacc tgccctcctc cacggcaggt cagcgtcgga agcagggcct ggctcagcac
781 cgggagggcg ccgccccagc tgccgccccg tccttctcgg agagggagct gcctcagccg
841 ccccccttgc tgtcgccgca gaatgcccct cacgtcgccc tgggccccca tctcaggccc
901 cccttcctgg gggtgccctc ggctctgtgc cagaccccag gctacggctt cctgcccccc
961 gcgcaggcgg agatgttcgc ccggcagcag gagctcctgc ggaagcagaa cctggcccgg
1021 ctggagctgc ccgccgacct cctgcggcag aaggagctgg agagcgcgcg cccacagctg
1081 ctggcgcccg agaccgccct gcgccccaac gacggcgccg aggagctgca gcggcgcggg
1141 gccctgctgg tgctgaacca cggcgcggcg ccactgctgg ccctgccccc ccaggggccc
1201 ccgggctccg gaccccccac cccgtcccgg gactctgccc ggcgagcccc ccggaagggg
1261 ggtcccggcc ctgcctcagc gcggcccagc gagtccaagg agatgacggg ggctaggctc
1321 tgggcacaag atggctcgga agacgagccc cccaaagact cggacggaga ggaccccgag
1381 acggcagctg ttgggtgcag ggggcccact ccgggccaag ctccagctgg aggggccggc
1441 gccgagggga aggggctttt cccagggtcc acactgcccc tgggcttccc ttatgccgtc
1501 agcccctact tccacacagg cgcggtaggg ggactctcca tggatgggga ggaggcccca
1561 gcccctgagg acgtcaccaa gtggaccgtg gatgacgtct gcagcttcgt ggggggcctg
1621 tctggctgtg gagagtacac tcgggtcttc agggagcagg ggatcgacgg ggagaccctg
1681 ccactgctga cggaggagca cctgctgacc aacatggggc tgaagctggg gcccgccctc
1741 aagatccggg cccaggtgag acgctgggga gtgaggtcag ggtctccaga ccacagctgg
1801 gcagaaagct ctgggtgggt gtgcgacagc ccccaccagg ccatctctct gcaggtggcc
1861 aggcgcctgg gccgagtttt ctacgtggcc agcttccccg tggctctgcc actgcagcca
1921 ccaaccctgc gggccccgga gcgagaactc ggcacaggag agcagccctt gtcccccacg
1981 acggccacgt ccccctatgg agggggccac gcccttgccg gtcaaacttc acccaagcag
2041 gagaatggga ccttggctct acttccaggg gcccccgacc cttcccagcc tctgtgttga
//