LOCUS       JF913492                7250 bp    mRNA    linear   HUM 18-MAR-2013
DEFINITION  Homo sapiens ATP-binding cassette sub-family A member 13 variant 3
            (ABCA13) mRNA, complete cds, alternatively spliced.
ACCESSION   JF913492
VERSION     JF913492.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 7250)
  AUTHORS   Maess,M.B., Stolle,K., Cullen,P. and Lorkowski,S.
  TITLE     Evidence for an alternative genomic structure, mRNA and protein
            sequence of human ABCA13
  JOURNAL   Gene 515 (2), 298-307 (2013)
   PUBMED   23266639
REFERENCE   2  (bases 1 to 7250)
  AUTHORS   Maess,M.B., Stolle,K., Cullen,P. and Lorkowski,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2011) Institute of Nutrition, Friedrich Schiller
            University Jena, Dornburgerstr. 25, Jena 07743, Germany
FEATURES             Location/Qualifiers
     source          1..7250
                     /db_xref="H-InvDB:HIT000715569"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
     gene            1..7250
                     /gene="ABCA13"
     exon            1..645
                     /gene="ABCA13"
                     /number=1
     5'UTR           1..127
                     /gene="ABCA13"
     CDS             128..6781
                     /gene="ABCA13"
                     /note="alternatively spliced"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 13
                     variant 3"
                     /protein_id="AFH89042.1"
                     /translation="MVICLTLEALWKNLKKDNWNVSNVLMTFTQHPNNLLKTIETVLE
                     ASSGIKSDYEGDLNKSLYFDTPLSQNITHHQLEKAIHNVLSRIALWRKGLLFNNSEWI
                     TSTRTLFQPLFEIFIKATTGKNVTSEKEERTKKEMIDFPYSFKPFFCLEKYLGGLFVL
                     TKYWQQIPLTDQSVVEICEVFQQTVKPSEAMEMLQKVKMMVVRVLTIVAENPSWTKDI
                     LCATLSCKQNGIRHLILSAIQGVTLAQDHFQEIEKIWSSPNQLNCESLSKNLSSTLES
                     FKSSLENATGQDCTSQPRLETVQQHLYMLAKSLEETWSSGNPIMTFLSNFTVTEDVKI
                     KDLMKNITKLTEELRSSIQISNETIHSILEANISHSKVLFSALTVALSGKCDQEILHL
                     LLTFPKGEKSWIAAEELCSLPGSKVYSLIVLLSRNLDVRAFIYKTLMPSEANGLLNSL
                     LDIVSSLSALLAKAQHVFEYLPEFLHTFKITALLETLDFQQVSQNVQARSSAFGSFQF
                     VMKMVCKDQASFLSDSNMFINLPRVKELLEDDKEKFNIPEDSTPFCLKLYQEILQLPN
                     GALVWTFLKPILHGKILYTPNTPEINKVIQKANYTFYIVDKLKTLSETLLEMSSLFQR
                     SGSGQMFNQLQEALRNKFVRNFVENQLHIDVDKLTEKLQTYGGLLDEMFNHAGAGRFR
                     FLGSILVNLSSCVALNRFQALQSVDILETKAHELLQQNSFLASIIFSNSLFDKNFRSE
                     SVKLPPHVSYTIRTNVLYSVRTDVVKNPSWKFHPQNLPADGFKYNYVFAPLQDMIERA
                     IILVQTGQEALEPAAQTQAAPYPCHTSDLFLNNVGFFFPLIMMLTWMVSVASMVRKLV
                     YEQEIQIEEYMRMMGVHPVIHFLAWFLENMAVLTISSATLAIVLKTSGIFAHSNTFIV
                     FLFLLDFGMSVVMLSYLLSAFFSQANTAALCTSLVYMISFLPYIVLLVLHNQLSFVNQ
                     TFLCLLSTTAFGQGVFFITFLEGQETGIQWNNMYQALEQGGMTFGWVCWMILFDSSLY
                     FLCGWYLSNLIPGTFGLRKPWYFPFTASYWKSVGFLVEKRQYFLSSSLFFFNENFDNK
                     GSSLQNREGELEGSAPGVTLVSVTKEYEGHKAVVQDLSLTFYRDQITALLGTNGAGKT
                     TIISMLTGLHPPTSGTIIINGKNLQTDLSRVRMELGVCPQQDILLDNLTVREHLLLFA
                     SIKAPQWTKKELHQQVNQTLQDVDLTQHQHKQTRALSGGLKRKLSLGIAFMGMSRTVV
                     LDEPTSGVDPCSRHSLWDILLKYREGRTIIFTTHHLDEAEALSDRVAVLQHGRLRCCG
                     PPFCLKEAYGQGLRLTLTRQPSVLEAHDLKDMACVTSLIKIYIPQAFLKDSSGSELTY
                     TIPKDTDKACLKGLFQALDENLHQLHLTGYGISDTTLEEVFLMLLQDSNKKSHIALGT
                     ESELQNHRPTGHLSGYCGSLARPATVQGVQLLRAQVAAILARRLRRTLRAGKSTLADL
                     LLPVLFVALAMGLFMVRPLATEYPPLRLTPGHYQRAETYFFSSSGGDNLDLTRVLLRK
                     FRDQDLPCADLNPRQKNSSCWRTDPFSHPEFQDSCGCLKCPNRSASAPYLTNHLGHTL
                     LNLSGFNMEEYLLAPSEKPRLGGWSFGLKIPSEAGGANGNISKPPTLAKVWYNQKGFH
                     SLPSYLNHLNNLILWQHLPPTVDWRQYGITLYSHPYGGALLNKDKILESIRQCGVALC
                     IVLGFSILSASIGSSVVRDRVIGAKRLQHISGLGYRMYWFTNFLYDMLFYLVSVCLCV
                     AVIVAFQLTAFTFRKNLAATALLLSLFGYATLPWMYLMSRIFSSSDVAFISYVSLNFI
                     FGLCTMLITIMPRLLAIISKAKNLQNIYDVLKWVFTIFPQFCLGQGLVELCYNQIKYD
                     LTHNFGIDSYVSPFEMNFLGWIFVQLASQGTVLLLLRVLLHWDLLRWPRGHSTLQGTV
                     KSSKDTDVEKEEKRVFEGRTNGDILVLYNLSKHYRRFFQNIIAVQDISLGIPKGECFG
                     LLGVNGAGKSTTFKMLNGEVSLTSGHAIIRTPMGDAVDLSSAGTAGVLIGYCPQQDAL
                     DELLTGWEHLYYYCSLRGIPRQCIPEVAGDLIRRLHLEAHADKPVATYSGGTKRKLST
                     ALALVGKPDILLLDEPSSGMDPCSKRYLWQTIMKEVREGCAAVLTSHSMEECEALCTR
                     LAIMVNGSFKCLGSPQHIKNRKLNKTN"
     exon            646..755
                     /gene="ABCA13"
                     /number=2
     exon            756..874
                     /gene="ABCA13"
                     /number=3
     exon            875..1038
                     /gene="ABCA13"
                     /number=4
     exon            1039..1117
                     /gene="ABCA13"
                     /number=5
     exon            1118..1240
                     /gene="ABCA13"
                     /number=6
     exon            1241..1435
                     /gene="ABCA13"
                     /number=7
     exon            1436..1600
                     /gene="ABCA13"
                     /number=8
     exon            1601..1778
                     /gene="ABCA13"
                     /number=9
     exon            1779..1918
                     /gene="ABCA13"
                     /number=10
     exon            1919..2032
                     /gene="ABCA13"
                     /number=11
     exon            2033..2123
                     /gene="ABCA13"
                     /number=12
     exon            2124..2300
                     /gene="ABCA13"
                     /number=13
     exon            2301..2607
                     /gene="ABCA13"
                     /number=14
     exon            2608..2722
                     /gene="ABCA13"
                     /number=15
     exon            2723..3052
                     /gene="ABCA13"
                     /number=16
     exon            3053..3122
                     /gene="ABCA13"
                     /number=17
     exon            3123..3254
                     /gene="ABCA13"
                     /number=18
     exon            3255..3392
                     /gene="ABCA13"
                     /number=19
     exon            3393..3573
                     /gene="ABCA13"
                     /number=20
     exon            3574..3792
                     /gene="ABCA13"
                     /number=21
     exon            3793..3989
                     /gene="ABCA13"
                     /number=22
     exon            3990..4147
                     /gene="ABCA13"
                     /number=23
     exon            4148..4378
                     /gene="ABCA13"
                     /number=24
     exon            4379..4484
                     /gene="ABCA13"
                     /number=25
     exon            4485..4734
                     /gene="ABCA13"
                     /number=26
     exon            4735..4827
                     /gene="ABCA13"
                     /number=27
     exon            4828..4897
                     /gene="ABCA13"
                     /number=28
     exon            4898..5016
                     /gene="ABCA13"
                     /number=29
     exon            5017..5104
                     /gene="ABCA13"
                     /number=30
     exon            5105..5213
                     /gene="ABCA13"
                     /number=31
     exon            5214..5268
                     /gene="ABCA13"
                     /number=32
     exon            5269..5446
                     /gene="ABCA13"
                     /number=33a
     exon            5447..5562
                     /gene="ABCA13"
                     /number=34
     exon            5563..5719
                     /gene="ABCA13"
                     /number=35
     exon            5720..5973
                     /gene="ABCA13"
                     /number=36
     exon            5974..6166
                     /gene="ABCA13"
                     /number=37
     exon            6167..6276
                     /gene="ABCA13"
                     /number=38
     exon            6277..6427
                     /gene="ABCA13"
                     /number=39
     exon            6428..6562
                     /gene="ABCA13"
                     /number=40
     exon            6563..6666
                     /gene="ABCA13"
                     /number=41
     exon            6667..6759
                     /gene="ABCA13"
                     /number=42
     exon            6760..7250
                     /gene="ABCA13"
                     /number=43
     5'UTR           6782..7250
                     /gene="ABCA13"
BASE COUNT         1932 a         1687 c         1712 g         1919 t
ORIGIN      
        1 ataccctaat ccaatttcca ctcatagtgg ccctcaagat ataaaatggg aaataattca
       61 tgaagtgatc ccttttttgg ataaaatatt atcacaaaac agcacagaaa taggatcttt
      121 cttgaaaatg gtgatctgtc tcaccttaga agctctttgg aaaaacttaa agaaagataa
      181 ttggaatgtt tctaatgtgt tgatgacatt tactcagcat ccaaataacc ttttgaaaac
      241 catagaaaca gttttagagg cctccagtgg aattaaaagt gactatgaag gtgatttgaa
      301 taaaagttta tattttgaca cacctttgag tcagaatata actcatcatc aacttgaaaa
      361 agcaatccat aatgttttaa gtagaatagc tctctggagg aaaggacttc tgtttaacaa
      421 ctctgaatgg ataacttcca caagaacttt gtttcagcca ctttttgaga ttttcattaa
      481 agcaaccacc ggaaagaatg tcacatcaga aaaagaagag agaaccaaga aagagatgat
      541 tgactttcct tatagtttca aaccattttt ctgtttggag aaatacctgg gaggattatt
      601 tgtattgact aaatactggc aacaaatccc actaacagat caaagtgttg ttgagatttg
      661 tgaagttttc cagcagactg tgaagccctc agaagccatg gagatgctgc agaaagtgaa
      721 gatgatggtc gtacgtgtgc tcaccatcgt tgcagaaaac ccttcctgga ccaaggacat
      781 tttgtgtgct actctgagtt gcaagcaaaa tgggataagg catctcattt tatctgctat
      841 acaaggggtc actttggcgc aggaccactt ccaggaaatt gaaaagatat ggtcctcgcc
      901 gaatcagcta aattgtgaaa gtcttagcaa gaatctttct agcaccttgg agagcttcaa
      961 gagcagcttg gaaaatgcca ctggccagga ctgcacaagc cagccgaggc tggagacggt
     1021 gcagcagcac ttgtacatgt tggccaaaag cctcgaggaa acttggtcat cagggaatcc
     1081 catcatgact tttctcagca atttcacagt aactgaggat gtaaaaataa aagatttgat
     1141 gaagaatatc accaagttga ctgaggagct tcgctcttcc atccaaatct cgaatgagac
     1201 tatccatagc attctagaag caaatatttc ccactccaag gttctcttca gtgccctcac
     1261 cgtagctctg tctggaaagt gtgatcagga aatccttcat ctcctgctga catttcccaa
     1321 aggggaaaaa tcttggatcg cagcggagga actctgtagc ctgccagggt caaaagtgta
     1381 ttctctgatt gtgttgctga gtcgaaactt ggatgtgcga gctttcattt acaagactct
     1441 gatgccttct gaagcaaatg gcttgctcaa ctccttgctg gatatagttt ccagcctcag
     1501 cgccttgctt gccaaagccc agcacgtctt tgagtatctt cctgagtttc ttcacacatt
     1561 taaaatcact gccttgctag aaaccctgga ctttcaacag gtttcacaaa atgtccaggc
     1621 cagaagttca gcttttggtt ctttccagtt tgtgatgaag atggtttgca aggaccaagc
     1681 atcattcctt agcgattcta atatgtttat taatttgccc agagttaagg aactcttgga
     1741 agatgacaaa gaaaaattca acattcctga agattcaaca ccgttttgct tgaagcttta
     1801 tcaggaaatt ctacaattgc caaatggtgc tttggtgtgg accttcctaa aacccatatt
     1861 gcatggaaaa atactataca caccaaacac tccagaaatt aacaaggtca ttcaaaaggc
     1921 taattacacc ttttatattg tggacaaact aaaaacttta tcagaaacac tgctggaaat
     1981 gtccagcctt ttccagagaa gtggaagtgg ccagatgttc aaccagctgc aggaggccct
     2041 gagaaacaaa tttgtaagaa actttgtaga aaaccagttg cacattgatg tagacaaact
     2101 tactgaaaaa ctccagacat acggagggct gctggatgag atgtttaacc atgcaggcgc
     2161 tggacgcttc cgtttcttgg gcagcatctt ggtcaatctc tcttcctgcg tggcactgaa
     2221 ccgtttccag gctctgcagt ctgtcgacat cctggagact aaagcacatg aactcttgca
     2281 gcagaacagc ttcttggcca gtatcatttt cagcaattcc ttattcgaca agaacttcag
     2341 atcagagtct gtcaaactgc caccccatgt ctcatacaca atccggacca atgtgttata
     2401 cagcgtgcga acagatgtgg taaaaaaccc ttcttggaag ttccaccctc agaatctacc
     2461 agctgatggg ttcaaatata actacgtctt tgccccactg caagacatga tcgaaagagc
     2521 catcattttg gtgcagactg ggcaggaagc cctggaacca gcagcacaga ctcaggcggc
     2581 cccttacccc tgccatacca gcgacctatt cctgaacaac gttggtttct tttttccact
     2641 gataatgatg ctgacgtgga tggtgtctgt ggccagcatg gtcagaaagt tggtgtatga
     2701 gcaggagata cagatagaag agtatatgcg gatgatggga gtgcatccag tgatccattt
     2761 cctggcctgg ttcctggaga acatggctgt gttgaccata agcagtgcta ctctggccat
     2821 cgttctgaaa acaagtggca tctttgcaca cagcaatacc tttattgttt tcctctttct
     2881 cttggatttt gggatgtcag tcgtcatgct gagctacctc ttgagtgcat ttttcagcca
     2941 agctaataca gcggcccttt gtaccagcct ggtgtacatg atcagctttc tgccctacat
     3001 agttctattg gttctacata accaattaag ttttgttaat cagacatttc tgtgccttct
     3061 ttcgacaacc gcctttggac aaggggtatt ttttattaca ttcctggaag gacaagagac
     3121 agggattcaa tggaataata tgtaccaggc tctggaacaa gggggcatga catttggctg
     3181 ggtttgctgg atgattcttt ttgattcaag cctttatttt ttgtgtggat ggtacttgag
     3241 caacttgatt cctggaacat ttggtttacg gaaaccatgg tatttcccct ttactgcctc
     3301 atattggaag agtgtgggtt tcttggtgga gaaaaggcaa tactttctaa gttctagtct
     3361 gttcttcttc aatgagaact ttgacaataa agggtcatca ctgcaaaaca gggaaggaga
     3421 gcttgaagga agtgccccgg gagtcaccct ggtgtctgtg accaaggaat atgagggcca
     3481 caaggctgtg gtccaagacc tcagcctgac cttctacaga gaccaaatca ccgccctgct
     3541 ggggacaaac ggtgccggga aaaccactat catatccatg ttgacggggc tccaccctcc
     3601 cacttctgga accatcatca tcaatggcaa gaacctacag acagacctgt cgagggtcag
     3661 aatggagctt ggtgtgtgtc cgcagcagga catcctgttg gacaacctca ccgtccggga
     3721 acatttgctg ctctttgctt ccataaaggc gcctcagtgg accaagaagg agctgcatca
     3781 gcaagtcaat caaactcttc aggatgtgga cttaactcag catcagcaca aacagacccg
     3841 agctctgtct ggaggcctga agaggaagct ctcccttggc attgctttca tgggcatgtc
     3901 gaggaccgtg gttctggatg agcccaccag tggggtggac ccttgctccc ggcatagcct
     3961 gtgggacatt ctgctcaagt accgagaagg tcgtacgatc atcttcacaa cccaccacct
     4021 ggatgaagct gaagcgctga gtgaccgcgt ggccgtcctc cagcatggga ggctcaggtg
     4081 ctgcggtcct cccttctgcc tgaaggaggc atatggccag gggctccgcc tgacactcac
     4141 gaggcagcct tctgttctgg aggcccatga tctgaaagac atggcttgtg ttacatccct
     4201 gataaagatc tatattccac aagcatttct caaagacagc agtggaagtg agctgaccta
     4261 caccattcca aaggacacag acaaggcctg cttgaaaggg ctcttccagg ccctggatga
     4321 gaacctgcat cagctgcacc tgacgggcta tgggatctca gacaccacct tagaagaggt
     4381 gtttttgatg cttttgcaag attccaacaa gaaatctcac attgccctgg ggactgagtc
     4441 agagctgcag aaccacaggc ctacaggaca tctgtctggc tactgtggct ccctagcacg
     4501 gcccgcaact gtgcagggcg tccagctgct ccgcgcacaa gtggccgcga tcctggcccg
     4561 gaggctccgc cgcacgctgc gcgccgggaa gagcaccctc gccgacctgc tgctgccagt
     4621 cctcttcgtg gccttggcca tgggcttgtt catggtgaga cccctggcca ccgagtaccc
     4681 tcccctcaga ctcacacctg gacattacca gcgggccgag acctactttt tcagcagcag
     4741 tgggggcgac aacttggacc tcacccgtgt gcttctgcgg aagtttagag atcaagattt
     4801 gccctgtgca gatttaaacc cacgccagaa gaattcttca tgctggcgca cagatccctt
     4861 ttctcaccca gaattccagg attcatgtgg ctgcctgaag tgtccaaata gaagtgctag
     4921 tgctccctac ctgaccaacc acctgggcca cacactgttg aatctctcag gcttcaatat
     4981 ggaggagtac ttgctggcac catctgaaaa accaaggctt ggaggttggt cttttggatt
     5041 aaaaatcccc agtgaagctg gaggtgcaaa tggaaacata tcaaaacccc caactctggc
     5101 aaaggtgtgg tataatcaga agggttttca ttccctacct tcctacttaa atcatctaaa
     5161 caaccttatt ttgtggcagc acctaccccc tactgtggac tggagacaat acggaataac
     5221 actctacagc cacccatatg gaggggcctt gctgaacaag gacaagatcc tggagagcat
     5281 ccgtcagtgt ggagtggccc tctgcatcgt gctgggattc tccatcctgt ctgcatccat
     5341 cggcagctct gtggtgaggg acagggtgat tggagccaaa aggttgcagc acataagtgg
     5401 ccttggctac aggatgtact ggttcacaaa cttcctatat gacatgctct tttacttggt
     5461 ttccgtctgc ctgtgtgttg ccgttattgt cgccttccag ttaacagctt ttactttccg
     5521 caagaacttg gcagccacgg ccctcctgct gtcacttttc ggatatgcaa ctcttccatg
     5581 gatgtacctg atgtccagaa tcttttccag ttcggacgtg gctttcattt cctatgtctc
     5641 actaaacttc atctttggcc tttgtaccat gctcataacc attatgcccc ggttgctagc
     5701 catcatctcc aaagctaaga atttacagaa tatctatgat gtcctcaagt gggtctttac
     5761 tatttttcct caattctgtc ttggtcaagg actggtagaa ctctgctata atcagatcaa
     5821 atatgacctg acccacaact tcggcattga ttcctatgtg agtccctttg agatgaactt
     5881 tctgggctgg atcttcgtgc aactggcctc gcagggcaca gtacttctcc tcttgagggt
     5941 tctgctacac tgggaccttc tgcgatggcc aaggggtcat tctactctcc aaggcacagt
     6001 caaatcttct aaggatacag atgttgaaaa agaggaaaag agagtgtttg aaggaaggac
     6061 caatggagac attcttgtgt tatacaacct tagtaaacat tatcgacgct ttttccagaa
     6121 tattattgct gtgcaagata ttagtttggg cataccaaaa ggagagtgct ttggacttct
     6181 aggggtgaat ggagctggga agagcacgac tttcaaaatg ctgaatggtg aagtttctct
     6241 aacttcagga catgctatca tcaggactcc catgggagac gccgtggacc tgtcttctgc
     6301 tggcacggca ggcgtgctca ttggctactg tccccagcag gatgccctgg acgagcttct
     6361 gactggttgg gaacatctct attattactg tagcttacgc gggattccaa ggcagtgcat
     6421 ccctgaggtt gctggagacc tcatcaggcg cttacacctc gaagcccacg cggacaaacc
     6481 tgtggccacc tacagtgggg gaaccaagcg gaaactctct acagccctgg ccctggtggg
     6541 gaaacctgac attcttttat tggatgagcc cagctctggg atggatccct gctctaagcg
     6601 gtacctgtgg caaacaataa tgaaggaggt tcgggaaggc tgtgctgcgg tgctgacctc
     6661 ccacagcatg gaggagtgtg aggctctttg cacaagactg gccataatgg ttaacggcag
     6721 cttcaaatgt cttggttctc ctcagcacat caaaaatagg aagttaaata agacaaactg
     6781 aagtcaactg gtgaccaagc acatggagaa ggcagcatgg gtgcaggaga cgctgaagaa
     6841 cacgataata gaactttaca gccggctgat ctgagcttga gaaaaggagg tgcctttggg
     6901 tttgggacat ggaaagatag tgatgtcttt agagaaacag aagttgggtg ggctgtgagg
     6961 gtgaggagga ttctgggtgt tgagtatgtt cctagggaca ctgatgggct gtttggagaa
     7021 ttcctacgag gaagggctgt tgatattcat gttctctttg ctatggcaag aagcaggaga
     7081 gaaaacttaa agttgggggt gattattgcg tatggttgag acggaggaat aagtagctga
     7141 actcatcaca actttgaagc aatatttata aactctgaag tagagtgagc tgagctcaga
     7201 ttcatgttgc tgcatttatt ttaattatta ctaaatatag gcaatttgcc
//