LOCUS       HM243533                 882 bp    mRNA    linear   HUM 21-JUN-2010
DEFINITION  Homo sapiens cell-line STA-NB-10 FAM49A/SMC6 fusion mRNA, partial
            sequence.
ACCESSION   HM243533
VERSION     HM243533.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Storlazzi,C.T., Lonoce,A., Guastadisegni,M.C., Trombetta,D.,
            D'Addabbo,P., Daniele,G., L'Abbate,A., Macchia,G., Surace,C.,
            Kok,K., Ullmann,R., Purgato,S., Palumbo,O., Carella,M., Ambros,P.F.
            and Rocchi,M.
  TITLE     Gene amplification as double minutes or hsr in solid tumors. Origin
            and structure
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Storlazzi,C.T., Lonoce,A., Guastadisegni,M.C., Trombetta,D.,
            D'Addabbo,P., Daniele,G., L'Abbate,A., Macchia,G., Surace,C.,
            Kok,K., Ullmann,R., Purgato,S., Palumbo,O., Carella,M., Ambros,P.F.
            and Rocchi,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-MAY-2010) Department of Genetics and Microbiology,
            University of Bari, Via Amendola,219, Bari 70126, Italy
FEATURES             Location/Qualifiers
     source          1..882
                     /db_xref="H-InvDB:HIT000649602"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
                     /map="t(2)(p24.3;p24.2)"
                     /cell_line="STA-NB-10"
                     /tissue_type="dmin/hsr neuroblastoma"
     gene            complement(<1..>882)
                     /gene="FAM49A/SMC6 fusion"
     misc_feature    complement(1..859)
                     /gene="FAM49A/SMC6 fusion"
                     /note="SMC6 gene exons 5-12"
     misc_feature    complement(851..882)
                     /gene="FAM49A/SMC6 fusion"
                     /note="FAM49A gene exon 1"
     misc_recomb     851..859
                     /note="FAM49A/SMC6 breakpoint junction; nucleotide
                     microhomology at the fused DNA ends"
BASE COUNT          218 a          212 c          142 g          310 t
ORIGIN      
        1 cactgcccaa gccatttcat gtttcaagga ctctaaatta gtcttcattg tacttaaacc
       61 agcaatactt tgaaaacgtt cctctttctc tacacactgg cgctttagtt cagtaagccg
      121 ctcttctcct tgatgtatct gctcctttgt tctttctttc gtttccataa tgtatgaata
      181 atcttccttc atctgttcaa gttgcgttgc tttcatgaag aatttgtatt tgtctccttc
      241 atttttagac tgtaagaact gcttgctcat ttcttgtgtt aaaacagaaa ctggattatc
      301 cacctggatg ttaaaatgat caagaattgc aatcagctct tctttcctcg tggaaaccac
      361 ggagcctgtt gcacttttaa gtttataaga tcgacttcca tctatgctga tgtgttgctg
      421 tataagtata gagttaccat acacactggc tttaaaggca tcatctcctc tgttcctcaa
      481 tgttattgag atatctgcag agttctgtcc atctttcaca aaacctttta aagaggatcc
      541 tctattagta gcaactgctc ttccaccaag accgactatg agagctgtga gtactgcact
      601 cttcccactt ccattgttgc caacaacaaa gttgacatta gaaccaaact taaaaggtcc
      661 aagcattgaa tgacacatga agttttttag gtgatactct caattattcc aacttctgct
      721 gcagtcaaag tagtaccttt acattcgtct tcgtcaccat ctttatcaaa atcctccaat
      781 tcttcttgtc ttggcctttt ggcattttta ggagaggaaa aattttcttc ctttcttttg
      841 gccatcaggt cgagtcgccg ccgccctgct ctgccgcccg ct
//