LOCUS HM243533 882 bp mRNA linear HUM 21-JUN-2010 DEFINITION Homo sapiens cell-line STA-NB-10 FAM49A/SMC6 fusion mRNA, partial sequence. ACCESSION HM243533 VERSION HM243533.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 882) AUTHORS Storlazzi,C.T., Lonoce,A., Guastadisegni,M.C., Trombetta,D., D'Addabbo,P., Daniele,G., L'Abbate,A., Macchia,G., Surace,C., Kok,K., Ullmann,R., Purgato,S., Palumbo,O., Carella,M., Ambros,P.F. and Rocchi,M. TITLE Gene amplification as double minutes or hsr in solid tumors. Origin and structure JOURNAL Unpublished REFERENCE 2 (bases 1 to 882) AUTHORS Storlazzi,C.T., Lonoce,A., Guastadisegni,M.C., Trombetta,D., D'Addabbo,P., Daniele,G., L'Abbate,A., Macchia,G., Surace,C., Kok,K., Ullmann,R., Purgato,S., Palumbo,O., Carella,M., Ambros,P.F. and Rocchi,M. TITLE Direct Submission JOURNAL Submitted (19-MAY-2010) Department of Genetics and Microbiology, University of Bari, Via Amendola,219, Bari 70126, Italy FEATURES Location/Qualifiers source 1..882 /db_xref="H-InvDB:HIT000649602" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="2" /map="t(2)(p24.3;p24.2)" /cell_line="STA-NB-10" /tissue_type="dmin/hsr neuroblastoma" gene complement(<1..>882) /gene="FAM49A/SMC6 fusion" misc_feature complement(1..859) /gene="FAM49A/SMC6 fusion" /note="SMC6 gene exons 5-12" misc_feature complement(851..882) /gene="FAM49A/SMC6 fusion" /note="FAM49A gene exon 1" misc_recomb 851..859 /note="FAM49A/SMC6 breakpoint junction; nucleotide microhomology at the fused DNA ends" BASE COUNT 218 a 212 c 142 g 310 t ORIGIN 1 cactgcccaa gccatttcat gtttcaagga ctctaaatta gtcttcattg tacttaaacc 61 agcaatactt tgaaaacgtt cctctttctc tacacactgg cgctttagtt cagtaagccg 121 ctcttctcct tgatgtatct gctcctttgt tctttctttc gtttccataa tgtatgaata 181 atcttccttc atctgttcaa gttgcgttgc tttcatgaag aatttgtatt tgtctccttc 241 atttttagac tgtaagaact gcttgctcat ttcttgtgtt aaaacagaaa ctggattatc 301 cacctggatg ttaaaatgat caagaattgc aatcagctct tctttcctcg tggaaaccac 361 ggagcctgtt gcacttttaa gtttataaga tcgacttcca tctatgctga tgtgttgctg 421 tataagtata gagttaccat acacactggc tttaaaggca tcatctcctc tgttcctcaa 481 tgttattgag atatctgcag agttctgtcc atctttcaca aaacctttta aagaggatcc 541 tctattagta gcaactgctc ttccaccaag accgactatg agagctgtga gtactgcact 601 cttcccactt ccattgttgc caacaacaaa gttgacatta gaaccaaact taaaaggtcc 661 aagcattgaa tgacacatga agttttttag gtgatactct caattattcc aacttctgct 721 gcagtcaaag tagtaccttt acattcgtct tcgtcaccat ctttatcaaa atcctccaat 781 tcttcttgtc ttggcctttt ggcattttta ggagaggaaa aattttcttc ctttcttttg 841 gccatcaggt cgagtcgccg ccgccctgct ctgccgcccg ct //