LOCUS HM116553 1860 bp mRNA linear HUM 31-AUG-2010
DEFINITION Homo sapiens HNF1 beta A splice variant 1 (HNF1B) mRNA, complete
cds, alternatively spliced.
ACCESSION HM116553
VERSION HM116553.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1860)
AUTHORS Yang,C.-W. and Tsai,D.-Y.
TITLE Homo sapiens HNF1 beta A mRNA splicing variant 1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1860)
AUTHORS Yang,C.-W. and Tsai,D.-Y.
TITLE Direct Submission
JOURNAL Submitted (12-APR-2010) Department of Microbiology, Soochow
University, No.70, Linxi Rd., Taipei 111, Taiwan, ROC
FEATURES Location/Qualifiers
source 1..1860
/db_xref="H-InvDB:HIT000649193"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="17"
/map="17q12"
/cell_line="HepG2"
/PCR_primers="fwd_seq: ggggagtaacaggtgtctggag, rev_seq:
gtcaggtaagcagggacctctc"
gene 1..1860
/gene="HNF1B"
CDS 135..1730
/gene="HNF1B"
/note="transcription factor; alternatively spliced"
/codon_start=1
/product="HNF1 beta A splice variant 1"
/protein_id="ADM43490.1"
/translation="MVSKLTSLQQELLSALLSSGVTKEVLVQALEELLPSPNFGVKLE
TLPLSPGSGAEPDTKPVFHTLTNGHAKGRLSGDEGSEDGDDYDTPPILKELQALNTEE
AAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPM
KTQKRAALYTWYVRKQREILRQFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQ
ILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFAN
RRKEEAFRQKLAMDAYSSNQTHSLNPLLSHGSPHHQPSSSPPNKLSGVRYSQQGNNEI
TSSSTISHHGNSAMVTSQSVLQQVSPASLDPGHNLLSPDGKMISVSGGGLPPVSTLTN
IHSLSHHNPQQSQNLIMTPLSGVMAIAQSLNTSQAQSVPVINSVAGSLAALQPVQFSQ
QLHSPHQQPLMQQSPGSHMAQQPFMAAVTQLQNSHMYAHKQEPPQYSHTSRFPSAMVV
TDTSSISTLTNMSSSKQCPLQAW"
BASE COUNT 439 a 633 c 465 g 323 t
ORIGIN
1 ggggagtaac aggtgtctgg aggctgaagg gtggaggggt tcctggattt ggggtttgct
61 tgtgaaactc ccctccaccc tcctctctcg cacccaccca ccccctcacc cccttctttt
121 tccgtccttg gaaaatggtg tccaagctca cgtcgctcca gcaagaactc ctgagcgccc
181 tgctgagctc cggggtcacc aaggaggtgc tggttcaggc cttggaggag ttgctgccat
241 ccccgaactt cggggtgaag ctggagacgc tgcccctgtc ccctggcagc ggggccgagc
301 ccgacaccaa gccggtcttc catactctca ccaacggcca cgccaagggc cgcttgtccg
361 gcgacgaggg ctccgaggac ggcgacgact atgacacacc tcccatcctc aaggagctgc
421 aggcgctcaa caccgaggag gcggcggagc agcgggcgga ggtggaccgg atgctcagtg
481 aggacccttg gagggctgct aaaatgatca agggttacat gcagcaacac aacatccccc
541 agagggaggt ggtcgatgtc accggcctga accagtcgca cctctcccag catctcaaca
601 agggcacccc tatgaagacc cagaagcgtg ccgctctgta cacctggtac gtcagaaagc
661 aacgagagat cctccgacag ttcagtcaac agagccatgg gcctgggcag tccgatgatg
721 cctgctctga gcccaccaac aagaagatgc gccgcaaccg gttcaaatgg gggcccgcgt
781 cccagcaaat cttgtaccag gcctacgatc ggcaaaagaa ccccagcaag gaagagagag
841 aggccttagt ggaggaatgc aacagggcag aatgtttgca gcgaggggtg tccccctcca
901 aagcccacgg cctgggctcc aacttggtca ctgaggtccg tgtctacaac tggtttgcaa
961 accgcaggaa ggaggaggca ttccggcaaa agctggccat ggacgcctat agctccaacc
1021 agactcacag cctgaaccct ctgctctccc acggctcccc ccaccaccag cccagctcct
1081 ctcctccaaa caagctgtca ggagtgcgct acagccagca gggaaacaat gagatcactt
1141 cctcctcaac aatcagtcac catggcaaca gcgccatggt gaccagccag tcggttttac
1201 agcaagtctc cccagccagc ctggacccag gccacaatct cctctcacct gatggtaaaa
1261 tgatctcagt ctcaggagga ggtttgcccc cagtcagcac cttgacgaat atccacagcc
1321 tctcccacca taatccccag caatctcaaa acctcatcat gacacccctc tctggagtca
1381 tggcaattgc acaaagcctc aacacctccc aagcacagag tgtccctgtc atcaacagtg
1441 tggccggcag cctggcagcc ctgcagcccg tccagttctc ccagcagctg cacagccctc
1501 accagcagcc cctcatgcag cagagcccag gcagccacat ggcccagcag cccttcatgg
1561 cagctgtgac tcagctgcag aactcacaca tgtacgcaca caagcaggaa cccccccagt
1621 attcccacac ctcccggttt ccatctgcaa tggtggtcac agataccagc agcatcagta
1681 cactcaccaa catgtcttca agtaaacagt gtcctctaca agcctggtga tgcccacaca
1741 ccacttactt cgtgcgcaac aacaaggacc ctgttttcca caccatcacc ctctgggcag
1801 ctgtcatgga aaagcccagt gacctgaccg gcacctgcga gaggtccctg cttacctgac
//