LOCUS GL383583 96924 bp DNA linear CON 06-JAN-2017
DEFINITION Homo sapiens chromosome 22 genomic contig, GRCh38 reference
assembly alternate locus group ALT_REF_LOCI_1.
ACCESSION GL383583
VERSION GL383583.2
DBLINK BioProject: PRJNA31257
KEYWORDS ALTERNATE_LOCUS.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 96924)
AUTHORS Lander,E.S., Linton,L.M., Birren,B., Nusbaum,C., Zody,M.C.,
Baldwin,J., Devon,K., Dewar,K., Doyle,M., FitzHugh,W., Funke,R.,
Gage,D., Harris,K., Heaford,A., Howland,J., Kann,L., Lehoczky,J.,
LeVine,R., McEwan,P., McKernan,K., Meldrim,J., Mesirov,J.P.,
Miranda,C., Morris,W., Naylor,J., Raymond,C., Rosetti,M.,
Santos,R., Sheridan,A., Sougnez,C., Stange-Thomann,N.,
Stojanovic,N., Subramanian,A., Wyman,D., Rogers,J., Sulston,J.,
Ainscough,R., Beck,S., Bentley,D., Burton,J., Clee,C., Carter,N.,
Coulson,A., Deadman,R., Deloukas,P., Dunham,A., Dunham,I.,
Durbin,R., French,L., Grafham,D., Gregory,S., Hubbard,T.,
Humphray,S., Hunt,A., Jones,M., Lloyd,C., McMurray,A., Matthews,L.,
Mercer,S., Milne,S., Mullikin,J.C., Mungall,A., Plumb,R., Ross,M.,
Shownkeen,R., Sims,S., Waterston,R.H., Wilson,R.K., Hillier,L.W.,
McPherson,J.D., Marra,M.A., Mardis,E.R., Fulton,L.A.,
Chinwalla,A.T., Pepin,K.H., Gish,W.R., Chissoe,S.L., Wendl,M.C.,
Delehaunty,K.D., Miner,T.L., Delehaunty,A., Kramer,J.B., Cook,L.L.,
Fulton,R.S., Johnson,D.L., Minx,P.J., Clifton,S.W., Hawkins,T.,
Branscomb,E., Predki,P., Richardson,P., Wenning,S., Slezak,T.,
Doggett,N., Cheng,J.F., Olsen,A., Lucas,S., Elkin,C.,
Uberbacher,E., Frazier,M., Gibbs,R.A., Muzny,D.M., Scherer,S.E.,
Bouck,J.B., Sodergren,E.J., Worley,K.C., Rives,C.M., Gorrell,J.H.,
Metzker,M.L., Naylor,S.L., Kucherlapati,R.S., Nelson,D.L.,
Weinstock,G.M., Sakaki,Y., Fujiyama,A., Hattori,M., Yada,T.,
Toyoda,A., Itoh,T., Kawagoe,C., Watanabe,H., Totoki,Y., Taylor,T.,
Weissenbach,J., Heilig,R., Saurin,W., Artiguenave,F., Brottier,P.,
Bruls,T., Pelletier,E., Robert,C., Wincker,P., Smith,D.R.,
Doucette-Stamm,L., Rubenfield,M., Weinstock,K., Lee,H.M.,
Dubois,J., Rosenthal,A., Platzer,M., Nyakatura,G., Taudien,S.,
Rump,A., Yang,H., Yu,J., Wang,J., Huang,G., Gu,J., Hood,L.,
Rowen,L., Madan,A., Qin,S., Davis,R.W., Federspiel,N.A.,
Abola,A.P., Proctor,M.J., Myers,R.M., Schmutz,J., Dickson,M.,
Grimwood,J., Cox,D.R., Olson,M.V., Kaul,R., Raymond,C., Shimizu,N.,
Kawasaki,K., Minoshima,S., Evans,G.A., Athanasiou,M., Schultz,R.,
Roe,B.A., Chen,F., Pan,H., Ramser,J., Lehrach,H., Reinhardt,R.,
McCombie,W.R., de la Bastide,M., Dedhia,N., Blocker,H.,
Hornischer,K., Nordsiek,G., Agarwala,R., Aravind,L., Bailey,J.A.,
Bateman,A., Batzoglou,S., Birney,E., Bork,P., Brown,D.G.,
Burge,C.B., Cerutti,L., Chen,H.C., Church,D., Clamp,M.,
Copley,R.R., Doerks,T., Eddy,S.R., Eichler,E.E., Furey,T.S.,
Galagan,J., Gilbert,J.G., Harmon,C., Hayashizaki,Y., Haussler,D.,
Hermjakob,H., Hokamp,K., Jang,W., Johnson,L.S., Jones,T.A.,
Kasif,S., Kaspryzk,A., Kennedy,S., Kent,W.J., Kitts,P.,
Koonin,E.V., Korf,I., Kulp,D., Lancet,D., Lowe,T.M., McLysaght,A.,
Mikkelsen,T., Moran,J.V., Mulder,N., Pollara,V.J., Ponting,C.P.,
Schuler,G., Schultz,J., Slater,G., Smit,A.F., Stupka,E.,
Szustakowski,J., Thierry-Mieg,D., Thierry-Mieg,J., Wagner,L.,
Wallis,J., Wheeler,R., Williams,A., Wolf,Y.I., Wolfe,K.H.,
Yang,S.P., Yeh,R.F., Collins,F., Guyer,M.S., Peterson,J.,
Felsenfeld,A., Wetterstrand,K.A., Patrinos,A., Morgan,M.J., de
Jong,P., Catanese,J.J., Osoegawa,K., Shizuya,H., Choi,S. and
Chen,Y.J.
CONSRTM International Human Genome Sequencing Consortium
TITLE Initial sequencing and analysis of the human genome
JOURNAL Nature 409 (6822), 860-921 (2001)
PUBMED 11237011
REMARK Erratum:[Nature 2001 Aug 2;412(6846):565]
REFERENCE 2 (bases 1 to 96924)
CONSRTM International Human Genome Sequencing Consortium
TITLE Finishing the euchromatic sequence of the human genome
JOURNAL Nature 431 (7011), 931-945 (2004)
PUBMED 15496913
REFERENCE 3 (bases 1 to 96924)
CONSRTM Genome Reference Consortium
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2013) NCBI, NIH, Bethesda, MD 20892, USA
COMMENT On Dec 20, 2013 this sequence version replaced GL383583.1.
The DNA sequence is composed of genomic sequence, primarily
finished clones that were sequenced as part of the Human Genome
Project. PCR products and WGS shotgun sequence have been added
where necessary to fill gaps or correct errors. All such additions
are manually curated by GRC staff. For more information see:
https://genomereference.org.
In this scaffold, AC192820.1 represents a haplotype containing a
common gene deletion of the APOBEC3A/APOBEC3B genes that results in
the creation of a hybrid gene.
Region: APOBEC.
FEATURES Location/Qualifiers
source 1..96924
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
/chromosome="22"
/map="22q13.1"
misc_feature 1..25950
/note="Anchor sequence. This sequence is derived from alt
loci or patch scaffold components that are also components
of the primary assembly unit. It was included to ensure a
robust alignment of this scaffold to the primary assembly
unit. Anchor component: AL022318.2"
misc_feature 25951..26091
/note="Anchor sequence. This sequence is derived from alt
loci or patch scaffold components that are also components
of the primary assembly unit. It was included to ensure a
robust alignment of this scaffold to the primary assembly
unit. Anchor component: KF457458.1"
misc_feature 26092..48732
/note="Anchor sequence. This sequence is derived from alt
loci or patch scaffold components that are also components
of the primary assembly unit. It was included to ensure a
robust alignment of this scaffold to the primary assembly
unit. Anchor component: AL022318.2"
misc_feature 48733..49019
/note="Anchor sequence. This sequence is derived from alt
loci or patch scaffold components that are also components
of the primary assembly unit. It was included to ensure a
robust alignment of this scaffold to the primary assembly
unit. Anchor component: KF457455.1"
misc_feature 49020..56171
/note="Anchor sequence. This sequence is derived from alt
loci or patch scaffold components that are also components
of the primary assembly unit. It was included to ensure a
robust alignment of this scaffold to the primary assembly
unit. Anchor component: AL022318.2"
CONTIG join(AL022318.2:101..26050,KF457458.1:1..141,
AL022318.2:26192..48832,complement(KF457455.1:1..287),
AL022318.2:49120..56271,AC192820.1:1..40753)
//