LOCUS FR748223 1480 bp mRNA linear HUM 18-JUL-2011 DEFINITION Homo sapiens mRNA for transcription factor 4 isoform I- (TCF4 gene). ACCESSION FR748223 VERSION FR748223.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1480) AUTHORS Sepp M. JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene Technolgy, Tallinn University of Technology, Akadeemia tee 15, 12618 Tallinn, ESTONIA. REFERENCE 2 AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T. TITLE functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing JOURNAL PLoS One 6(7), e22138-e22138(2011). PUBMED 21789225 FEATURES Location/Qualifiers source 1..1480 /db_xref="H-InvDB:HIT000714785" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..1356 /gene="TCF4" /product="transcription factor 4, isoform I-" /note="exons 10-20" /db_xref="GOA:P15884" /db_xref="HGNC:HGNC:11634" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="PDB:2KWF" /db_xref="PDB:6OD3" /db_xref="PDB:6OD4" /db_xref="PDB:6OD5" /db_xref="UniProtKB/Swiss-Prot:P15884" /protein_id="CBY80202.1" /translation="MQDGHHSSDPWSSSSGMNQPGYAGMLGNSSHIPQSSSYCSLHPH ERLSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGSGAAGSS QTGDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYE GPLHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLG SGYGTGLLSANRHSLMVGTHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQD PYRGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITSNNDD EDLTPEQKAEREKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILH QAVAVILSLEQQVRERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDASNHMGQ M" variation 1281 /replace="a" /note="SNP rs8766" BASE COUNT 393 a 411 c 356 g 320 t ORIGIN 1 atgcaagatg gccatcacag cagtgaccct tggagctcct ccagtgggat gaatcagcct 61 ggctatgcag gaatgttggg caactcttct catattccac agtccagcag ctactgtagc 121 ctgcatccac atgaacgttt gagctatcca tcacactcct cagcagacat caattccagt 181 cttcctccga tgtccacttt ccatcgtagt ggtacaaacc attacagcac ctcttcctgt 241 acgcctcctg ccaacgggac agacagtata atggcaaata gaggaagcgg ggcagccggc 301 agctcccaga ctggagatgc tctggggaaa gcacttgctt cgatctattc tccagatcac 361 actaacaaca gcttttcatc aaacccttca actcctgttg gctctcctcc atctctctca 421 gcaggcacag ctgtttggtc tagaaatgga ggacaggcct catcgtctcc taattatgaa 481 ggacccttac actctttgca aagccgaatt gaagatcgtt tagaaagact ggatgatgct 541 attcatgttc tccggaacca tgcagtgggc ccatccacag ctatgcctgg tggtcatggg 601 gacatgcatg gaatcattgg accttctcat aatggagcca tgggtggtct gggctcaggg 661 tatggaaccg gccttctttc agccaacaga cattcactca tggtggggac ccatcgtgaa 721 gatggcgtgg ccctgagagg cagccattct cttctgccaa accaggttcc ggttccacag 781 cttcctgtcc agtctgcgac ttcccctgac ctgaacccac cccaggaccc ttacagaggc 841 atgccaccag gactacaggg gcagagtgtc tcctctggca gctctgagat caaatccgat 901 gacgagggtg atgagaacct gcaagacacg aaatcttcgg aggacaagaa attagatgac 961 gacaagaagg atatcaaatc aattactagc aataatgacg atgaggacct gacaccagag 1021 cagaaggcag agcgtgagaa ggagcggagg atggccaaca atgcccgaga gcgtctgcgg 1081 gtccgtgaca tcaacgaggc tttcaaagag ctcggccgca tggtgcagct ccacctcaag 1141 agtgacaagc cccagaccaa gctcctgatc ctccaccagg cggtggccgt catcctcagt 1201 ctggagcagc aagtccgaga aaggaatctg aatccgaaag ctgcgtgtct gaaaagaagg 1261 gaggaagaga aggtgtcctc ggagcctccc cctctctcct tggccggccc acaccctgga 1321 atgggagacg catcgaatca catgggacag atgtaaaagg gtccaagttg ccacattgct 1381 tcattaaaac aagagaccac ttccttaaca gctgtattat cttaaaccca cataaacact 1441 tctccttaac ccccattttt gtaatataag acaagtctga //