LOCUS FR748222 1648 bp mRNA linear HUM 18-JUL-2011 DEFINITION Homo sapiens mRNA for transcription factor 4 isoform H- (TCF4 gene). ACCESSION FR748222 VERSION FR748222.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1648) AUTHORS Sepp M. JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene Technolgy, Tallinn University of Technology, Akadeemia tee 15, 12618 Tallinn, ESTONIA. REFERENCE 2 AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T. TITLE functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing JOURNAL PLoS One 6(7), e22138-e22138(2011). PUBMED 21789225 FEATURES Location/Qualifiers source 1..1648 /db_xref="H-InvDB:HIT000714784" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..1524 /gene="TCF4" /product="transcription factor 4, isoform H-" /note="exons 10c, 10-20" /db_xref="GOA:P15884" /db_xref="HGNC:HGNC:11634" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="PDB:2KWF" /db_xref="PDB:6OD3" /db_xref="PDB:6OD4" /db_xref="PDB:6OD5" /db_xref="UniProtKB/Swiss-Prot:P15884" /protein_id="CBY80201.1" /translation="MKFKQCRCSDTGLCCLDHEGKAEVYAPSASTADYNRDSPGYPSS KPATSTFPSSFFMQDGHHSSDPWSSSSGMNQPGYAGMLGNSSHIPQSSSYCSLHPHER LSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQT GDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGP LHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSG YGTGLLSANRHSLMVGTHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPY RGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITSNNDDED LTPEQKAEREKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQA VAVILSLEQQVRERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDASNHMGQM" variation 1449 /replace="a" /note="SNP rs8766" BASE COUNT 441 a 461 c 390 g 356 t ORIGIN 1 atgaaattta aacaatgcag atgctcagat acagggctat gttgcctgga ccacgaaggg 61 aaagcagagg tctatgctcc atcagcaagc actgccgact acaataggga ctcgccaggc 121 tatccttcct ccaaaccagc aaccagcact ttccctagct ccttcttcat gcaagatggc 181 catcacagca gtgacccttg gagctcctcc agtgggatga atcagcctgg ctatgcagga 241 atgttgggca actcttctca tattccacag tccagcagct actgtagcct gcatccacat 301 gaacgtttga gctatccatc acactcctca gcagacatca attccagtct tcctccgatg 361 tccactttcc atcgtagtgg tacaaaccat tacagcacct cttcctgtac gcctcctgcc 421 aacgggacag acagtataat ggcaaataga ggaagcgggg cagccggcag ctcccagact 481 ggagatgctc tggggaaagc acttgcttcg atctattctc cagatcacac taacaacagc 541 ttttcatcaa acccttcaac tcctgttggc tctcctccat ctctctcagc aggcacagct 601 gtttggtcta gaaatggagg acaggcctca tcgtctccta attatgaagg acccttacac 661 tctttgcaaa gccgaattga agatcgttta gaaagactgg atgatgctat tcatgttctc 721 cggaaccatg cagtgggccc atccacagct atgcctggtg gtcatgggga catgcatgga 781 atcattggac cttctcataa tggagccatg ggtggtctgg gctcagggta tggaaccggc 841 cttctttcag ccaacagaca ttcactcatg gtggggaccc atcgtgaaga tggcgtggcc 901 ctgagaggca gccattctct tctgccaaac caggttccgg ttccacagct tcctgtccag 961 tctgcgactt cccctgacct gaacccaccc caggaccctt acagaggcat gccaccagga 1021 ctacaggggc agagtgtctc ctctggcagc tctgagatca aatccgatga cgagggtgat 1081 gagaacctgc aagacacgaa atcttcggag gacaagaaat tagatgacga caagaaggat 1141 atcaaatcaa ttactagcaa taatgacgat gaggacctga caccagagca gaaggcagag 1201 cgtgagaagg agcggaggat ggccaacaat gcccgagagc gtctgcgggt ccgtgacatc 1261 aacgaggctt tcaaagagct cggccgcatg gtgcagctcc acctcaagag tgacaagccc 1321 cagaccaagc tcctgatcct ccaccaggcg gtggccgtca tcctcagtct ggagcagcaa 1381 gtccgagaaa ggaatctgaa tccgaaagct gcgtgtctga aaagaaggga ggaagagaag 1441 gtgtcctcgg agcctccccc tctctccttg gccggcccac accctggaat gggagacgca 1501 tcgaatcaca tgggacagat gtaaaagggt ccaagttgcc acattgcttc attaaaacaa 1561 gagaccactt ccttaacagc tgtattatct taaacccaca taaacacttc tccttaaccc 1621 ccatttttgt aatataagac aagtctga //