LOCUS FR748220 1660 bp mRNA linear HUM 18-JUL-2011 DEFINITION Homo sapiens mRNA for transcription factor 4 isoform A+ (TCF4 gene). ACCESSION FR748220 VERSION FR748220.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1660) AUTHORS Sepp M. JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene Technolgy, Tallinn University of Technology, Akadeemia tee 15, 12618 Tallinn, ESTONIA. REFERENCE 2 AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T. TITLE functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing JOURNAL PLoS One 6(7), e22138-e22138(2011). PUBMED 21789225 FEATURES Location/Qualifiers source 1..1660 /db_xref="H-InvDB:HIT000714782" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..1536 /gene="TCF4" /product="transcription factor 4, isoform A+" /note="exons 10a, 10-20" /db_xref="GOA:P15884" /db_xref="HGNC:HGNC:11634" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="PDB:2KWF" /db_xref="PDB:6OD3" /db_xref="PDB:6OD4" /db_xref="PDB:6OD5" /db_xref="UniProtKB/Swiss-Prot:P15884" /protein_id="CBY80199.1" /translation="MYCAYTIPGMGGNSLMYYYNGKAVYAPSASTADYNRDSPGYPSS KPATSTFPSSFFMQDGHHSSDPWSSSSGMNQPGYAGMLGNSSHIPQSSSYCSLHPHER LSYPSHSSADINSSLPPMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQT GDALGKALASIYSPDHTNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGP LHSLQSRIEDRLERLDDAIHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSG YGTGLLSANRHSLMVGTHREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPY RGMPPGLQGQSVSSGSSEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNN DDEDLTPEQKAEREKERRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLI LHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDASNHM GQM" variation 1461 /replace="a" /note="SNP rs8766" BASE COUNT 439 a 467 c 392 g 362 t ORIGIN 1 atgtactgcg catacacaat cccgggcatg ggcggcaact ctttgatgta ctactataat 61 gggaaagcgg tctatgctcc atcagcaagc actgccgact acaataggga ctcgccaggc 121 tatccttcct ccaaaccagc aaccagcact ttccctagct ccttcttcat gcaagatggc 181 catcacagca gtgacccttg gagctcctcc agtgggatga atcagcctgg ctatgcagga 241 atgttgggca actcttctca tattccacag tccagcagct actgtagcct gcatccacat 301 gaacgtttga gctatccatc acactcctca gcagacatca attccagtct tcctccgatg 361 tccactttcc atcgtagtgg tacaaaccat tacagcacct cttcctgtac gcctcctgcc 421 aacgggacag acagtataat ggcaaataga ggaagcgggg cagccggcag ctcccagact 481 ggagatgctc tggggaaagc acttgcttcg atctattctc cagatcacac taacaacagc 541 ttttcatcaa acccttcaac tcctgttggc tctcctccat ctctctcagc aggcacagct 601 gtttggtcta gaaatggagg acaggcctca tcgtctccta attatgaagg acccttacac 661 tctttgcaaa gccgaattga agatcgttta gaaagactgg atgatgctat tcatgttctc 721 cggaaccatg cagtgggccc atccacagct atgcctggtg gtcatgggga catgcatgga 781 atcattggac cttctcataa tggagccatg ggtggtctgg gctcagggta tggaaccggc 841 cttctttcag ccaacagaca ttcactcatg gtggggaccc atcgtgaaga tggcgtggcc 901 ctgagaggca gccattctct tctgccaaac caggttccgg ttccacagct tcctgtccag 961 tctgcgactt cccctgacct gaacccaccc caggaccctt acagaggcat gccaccagga 1021 ctacaggggc agagtgtctc ctctggcagc tctgagatca aatccgatga cgagggtgat 1081 gagaacctgc aagacacgaa atcttcggag gacaagaaat tagatgacga caagaaggat 1141 atcaaatcaa ttactaggtc aagatctagc aataatgacg atgaggacct gacaccagag 1201 cagaaggcag agcgtgagaa ggagcggagg atggccaaca atgcccgaga gcgtctgcgg 1261 gtccgtgaca tcaacgaggc tttcaaagag ctcggccgca tggtgcagct ccacctcaag 1321 agtgacaagc cccagaccaa gctcctgatc ctccaccagg cggtggccgt catcctcagt 1381 ctggagcagc aagtccgaga aaggaatctg aatccgaaag ctgcgtgtct gaaaagaagg 1441 gaggaagaga aggtgtcctc ggagcctccc cctctctcct tggccggccc acaccctgga 1501 atgggagacg catcgaatca catgggacag atgtaaaagg gtccaagttg ccacattgct 1561 tcattaaaac aagagaccac ttccttaaca gctgtattat cttaaaccca cataaacact 1621 tctccttaac ccccattttt gtaatataag acaagtctga //