LOCUS FR748219 1915 bp mRNA linear HUM 18-JUL-2011
DEFINITION Homo sapiens mRNA for transcription factor 4 isoform G- (TCF4
gene).
ACCESSION FR748219
VERSION FR748219.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1915)
AUTHORS Sepp M.
JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene
Technolgy, Tallinn University of Technology, Akadeemia tee 15,
12618 Tallinn, ESTONIA.
REFERENCE 2
AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T.
TITLE functional diversity of human basic helix-loop-helix transcription
factor TCF4 isoforms generated by alternative 5' exon usage and
splicing
JOURNAL PLoS One 6(7), e22138-e22138(2011).
PUBMED 21789225
FEATURES Location/Qualifiers
source 1..1915
/db_xref="H-InvDB:HIT000714781"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
CDS 1..1791
/gene="TCF4"
/product="transcription factor 4, isoform G-"
/note="exons 7b-I, 7-20"
/db_xref="GOA:P15884"
/db_xref="HGNC:HGNC:11634"
/db_xref="InterPro:IPR011598"
/db_xref="InterPro:IPR036638"
/db_xref="PDB:2KWF"
/db_xref="PDB:6OD3"
/db_xref="PDB:6OD4"
/db_xref="PDB:6OD5"
/db_xref="UniProtKB/Swiss-Prot:P15884"
/protein_id="CBY80198.1"
/translation="MKDIFFQFIIARVRKCYSLSCLHTLPVVPTLRKTERGSYSSYGR
ESNLQGCHQSLLGGDMDMGNPGTLSPTKPGSQYYQYSSNNPRRRPLHSSAMEVQTKKV
RKVPPGLPSSVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQDGHHSSDPWSSSS
GMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTN
HYSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPST
PVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAV
GPSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLMVGTHREDGVALRG
SHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDE
NLQDTKSSEDKKLDDDKKDIKSITSNNDDEDLTPEQKAEREKERRMANNARERLRVRD
INEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRRE
EEKVSSEPPPLSLAGPHPGMGDASNHMGQM"
variation 1716
/replace="a"
/note="SNP rs8766"
BASE COUNT 510 a 529 c 444 g 432 t
ORIGIN
1 atgaaggata tttttttcca gtttatcata gccagagtga ggaagtgtta ttccctctct
61 tgcttgcata cattgccagt agtgcctact ttacgtaaaa cagaaagggg ctcatactca
121 tcttatggga gagaatcaaa cttacagggt tgccaccaga gtctccttgg aggtgacatg
181 gatatgggca acccaggaac cctttcgccc accaaacctg gttcccagta ctatcagtat
241 tctagcaata atccccgaag gaggcctctt cacagtagtg ccatggaggt acagacaaag
301 aaagttcgaa aagttcctcc aggtttgcca tcttcagtct atgctccatc agcaagcact
361 gccgactaca atagggactc gccaggctat ccttcctcca aaccagcaac cagcactttc
421 cctagctcct tcttcatgca agatggccat cacagcagtg acccttggag ctcctccagt
481 gggatgaatc agcctggcta tgcaggaatg ttgggcaact cttctcatat tccacagtcc
541 agcagctact gtagcctgca tccacatgaa cgtttgagct atccatcaca ctcctcagca
601 gacatcaatt ccagtcttcc tccgatgtcc actttccatc gtagtggtac aaaccattac
661 agcacctctt cctgtacgcc tcctgccaac gggacagaca gtataatggc aaatagagga
721 agcggggcag ccggcagctc ccagactgga gatgctctgg ggaaagcact tgcttcgatc
781 tattctccag atcacactaa caacagcttt tcatcaaacc cttcaactcc tgttggctct
841 cctccatctc tctcagcagg cacagctgtt tggtctagaa atggaggaca ggcctcatcg
901 tctcctaatt atgaaggacc cttacactct ttgcaaagcc gaattgaaga tcgtttagaa
961 agactggatg atgctattca tgttctccgg aaccatgcag tgggcccatc cacagctatg
1021 cctggtggtc atggggacat gcatggaatc attggacctt ctcataatgg agccatgggt
1081 ggtctgggct cagggtatgg aaccggcctt ctttcagcca acagacattc actcatggtg
1141 gggacccatc gtgaagatgg cgtggccctg agaggcagcc attctcttct gccaaaccag
1201 gttccggttc cacagcttcc tgtccagtct gcgacttccc ctgacctgaa cccaccccag
1261 gacccttaca gaggcatgcc accaggacta caggggcaga gtgtctcctc tggcagctct
1321 gagatcaaat ccgatgacga gggtgatgag aacctgcaag acacgaaatc ttcggaggac
1381 aagaaattag atgacgacaa gaaggatatc aaatcaatta ctagcaataa tgacgatgag
1441 gacctgacac cagagcagaa ggcagagcgt gagaaggagc ggaggatggc caacaatgcc
1501 cgagagcgtc tgcgggtccg tgacatcaac gaggctttca aagagctcgg ccgcatggtg
1561 cagctccacc tcaagagtga caagccccag accaagctcc tgatcctcca ccaggcggtg
1621 gccgtcatcc tcagtctgga gcagcaagtc cgagaaagga atctgaatcc gaaagctgcg
1681 tgtctgaaaa gaagggagga agagaaggtg tcctcggagc ctccccctct ctccttggcc
1741 ggcccacacc ctggaatggg agacgcatcg aatcacatgg gacagatgta aaagggtcca
1801 agttgccaca ttgcttcatt aaaacaagag accacttcct taacagctgt attatcttaa
1861 acccacataa acacttctcc ttaaccccca tttttgtaat ataagacaag tctga
//