LOCUS FR748218 1738 bp mRNA linear HUM 18-JUL-2011 DEFINITION Homo sapiens mRNA for transcription factor 4 isoform D- (TCF4 gene). ACCESSION FR748218 VERSION FR748218.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1738) AUTHORS Sepp M. JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene Technolgy, Tallinn University of Technology, Akadeemia tee 15, 12618 Tallinn, ESTONIA. REFERENCE 2 AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T. TITLE functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing JOURNAL PLoS One 6(7), e22138-e22138(2011). PUBMED 21789225 FEATURES Location/Qualifiers source 1..1738 /db_xref="H-InvDB:HIT000714780" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..1614 /gene="TCF4" /product="transcription factor 4, isoform D-" /note="exons 8-20" /db_xref="GOA:P15884" /db_xref="HGNC:HGNC:11634" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="PDB:2KWF" /db_xref="PDB:6OD3" /db_xref="PDB:6OD4" /db_xref="PDB:6OD5" /db_xref="UniProtKB/Swiss-Prot:P15884" /protein_id="CBY80197.1" /translation="MDMGNPGTLSPTKPGSQYYQYSSNNPRRRPLHSSAMEVQTKKVR KVPPGLPSSVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQDGHHSSDPWSSSSG MNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLPPMSTFHRSGTNH YSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDHTNNSFSSNPSTP VGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLDDAIHVLRNHAVG PSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLMVGTHREDGVALRGS HSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGSSEIKSDDEGDEN LQDTKSSEDKKLDDDKKDIKSITSNNDDEDLTPEQKAEREKERRMANNARERLRVRDI NEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREE EKVSSEPPPLSLAGPHPGMGDASNHMGQM" variation 1539 /replace="a" /note="SNP rs8766" BASE COUNT 462 a 493 c 404 g 379 t ORIGIN 1 atggatatgg gcaacccagg aaccctttcg cccaccaaac ctggttccca gtactatcag 61 tattctagca ataatccccg aaggaggcct cttcacagta gtgccatgga ggtacagaca 121 aagaaagttc gaaaagttcc tccaggtttg ccatcttcag tctatgctcc atcagcaagc 181 actgccgact acaataggga ctcgccaggc tatccttcct ccaaaccagc aaccagcact 241 ttccctagct ccttcttcat gcaagatggc catcacagca gtgacccttg gagctcctcc 301 agtgggatga atcagcctgg ctatgcagga atgttgggca actcttctca tattccacag 361 tccagcagct actgtagcct gcatccacat gaacgtttga gctatccatc acactcctca 421 gcagacatca attccagtct tcctccgatg tccactttcc atcgtagtgg tacaaaccat 481 tacagcacct cttcctgtac gcctcctgcc aacgggacag acagtataat ggcaaataga 541 ggaagcgggg cagccggcag ctcccagact ggagatgctc tggggaaagc acttgcttcg 601 atctattctc cagatcacac taacaacagc ttttcatcaa acccttcaac tcctgttggc 661 tctcctccat ctctctcagc aggcacagct gtttggtcta gaaatggagg acaggcctca 721 tcgtctccta attatgaagg acccttacac tctttgcaaa gccgaattga agatcgttta 781 gaaagactgg atgatgctat tcatgttctc cggaaccatg cagtgggccc atccacagct 841 atgcctggtg gtcatgggga catgcatgga atcattggac cttctcataa tggagccatg 901 ggtggtctgg gctcagggta tggaaccggc cttctttcag ccaacagaca ttcactcatg 961 gtggggaccc atcgtgaaga tggcgtggcc ctgagaggca gccattctct tctgccaaac 1021 caggttccgg ttccacagct tcctgtccag tctgcgactt cccctgacct gaacccaccc 1081 caggaccctt acagaggcat gccaccagga ctacaggggc agagtgtctc ctctggcagc 1141 tctgagatca aatccgatga cgagggtgat gagaacctgc aagacacgaa atcttcggag 1201 gacaagaaat tagatgacga caagaaggat atcaaatcaa ttactagcaa taatgacgat 1261 gaggacctga caccagagca gaaggcagag cgtgagaagg agcggaggat ggccaacaat 1321 gcccgagagc gtctgcgggt ccgtgacatc aacgaggctt tcaaagagct cggccgcatg 1381 gtgcagctcc acctcaagag tgacaagccc cagaccaagc tcctgatcct ccaccaggcg 1441 gtggccgtca tcctcagtct ggagcagcaa gtccgagaaa ggaatctgaa tccgaaagct 1501 gcgtgtctga aaagaaggga ggaagagaag gtgtcctcgg agcctccccc tctctccttg 1561 gccggcccac accctggaat gggagacgca tcgaatcaca tgggacagat gtaaaagggt 1621 ccaagttgcc acattgcttc attaaaacaa gagaccactt ccttaacagc tgtattatct 1681 taaacccaca taaacacttc tccttaaccc ccatttttgt aatataagac aagtctga //