LOCUS FR748213 1948 bp mRNA linear HUM 18-JUL-2011 DEFINITION Homo sapiens mRNA for transcription factor 4 isoform B- delta (TCF4 gene). ACCESSION FR748213 VERSION FR748213.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1948) AUTHORS Sepp M. JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene Technolgy, Tallinn University of Technology, Akadeemia tee 15, 12618 Tallinn, ESTONIA. REFERENCE 2 AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T. TITLE functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing JOURNAL PLoS One 6(7), e22138-e22138(2011). PUBMED 21789225 FEATURES Location/Qualifiers source 1..1948 /db_xref="H-InvDB:HIT000714775" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..1824 /gene="TCF4" /product="transcription factor 4, isoform B-delta" /note="exons 3-7, 10-20" /db_xref="GOA:P15884" /db_xref="HGNC:HGNC:11634" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="PDB:2KWF" /db_xref="PDB:6OD3" /db_xref="PDB:6OD4" /db_xref="PDB:6OD5" /db_xref="UniProtKB/Swiss-Prot:P15884" /protein_id="CBY80192.1" /translation="MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGH FTGSNVEDRSSSGSWGNGGHPSPSRNYGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQS KTERGSYSSYGRESNLQGCHQVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQDG HHSSDPWSSSSGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLP PMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDH TNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLD DAIHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLMVG THREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGS SEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITSNNDDEDLTPEQKAEREKERRMA NNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVRERNL NPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDASNHMGQM" variation 1749 /replace="a" /note="SNP rs8766" BASE COUNT 525 a 532 c 465 g 426 t ORIGIN 1 atgcatcacc aacagcgaat ggctgcctta gggacggaca aagagctgag tgatttactg 61 gatttcagtg cgatgttttc acctcctgtg agcagtggga aaaatggacc aacttctttg 121 gcaagtggac attttactgg ctcaaatgta gaagacagaa gtagctcagg gtcctggggg 181 aatggaggac atccaagccc gtccaggaac tatggagatg ggactcccta tgaccacatg 241 accagcaggg accttgggtc acatgacaat ctctctccac cttttgtcaa ttccagaata 301 caaagtaaaa cagaaagggg ctcatactca tcttatggga gagaatcaaa cttacagggt 361 tgccaccagg tctatgctcc atcagcaagc actgccgact acaataggga ctcgccaggc 421 tatccttcct ccaaaccagc aaccagcact ttccctagct ccttcttcat gcaagatggc 481 catcacagca gtgacccttg gagctcctcc agtgggatga atcagcctgg ctatgcagga 541 atgttgggca actcttctca tattccacag tccagcagct actgtagcct gcatccacat 601 gaacgtttga gctatccatc acactcctca gcagacatca attccagtct tcctccgatg 661 tccactttcc atcgtagtgg tacaaaccat tacagcacct cttcctgtac gcctcctgcc 721 aacgggacag acagtataat ggcaaataga ggaagcgggg cagccggcag ctcccagact 781 ggagatgctc tggggaaagc acttgcttcg atctattctc cagatcacac taacaacagc 841 ttttcatcaa acccttcaac tcctgttggc tctcctccat ctctctcagc aggcacagct 901 gtttggtcta gaaatggagg acaggcctca tcgtctccta attatgaagg acccttacac 961 tctttgcaaa gccgaattga agatcgttta gaaagactgg atgatgctat tcatgttctc 1021 cggaaccatg cagtgggccc atccacagct atgcctggtg gtcatgggga catgcatgga 1081 atcattggac cttctcataa tggagccatg ggtggtctgg gctcagggta tggaaccggc 1141 cttctttcag ccaacagaca ttcactcatg gtggggaccc atcgtgaaga tggcgtggcc 1201 ctgagaggca gccattctct tctgccaaac caggttccgg ttccacagct tcctgtccag 1261 tctgcgactt cccctgacct gaacccaccc caggaccctt acagaggcat gccaccagga 1321 ctacaggggc agagtgtctc ctctggcagc tctgagatca aatccgatga cgagggtgat 1381 gagaacctgc aagacacgaa atcttcggag gacaagaaat tagatgacga caagaaggat 1441 atcaaatcaa ttactagcaa taatgacgat gaggacctga caccagagca gaaggcagag 1501 cgtgagaagg agcggaggat ggccaacaat gcccgagagc gtctgcgggt ccgtgacatc 1561 aacgaggctt tcaaagagct cggccgcatg gtgcagctcc acctcaagag tgacaagccc 1621 cagaccaagc tcctgatcct ccaccaggcg gtggccgtca tcctcagtct ggagcagcaa 1681 gtccgagaaa ggaatctgaa tccgaaagct gcgtgtctga aaagaaggga ggaagagaag 1741 gtgtcctcgg agcctccccc tctctccttg gccggcccac accctggaat gggagacgca 1801 tcgaatcaca tgggacagat gtaaaagggt ccaagttgcc acattgcttc attaaaacaa 1861 gagaccactt ccttaacagc tgtattatct taaacccaca taaacacttc tccttaaccc 1921 ccatttttgt aatataagac aagtctga //