LOCUS FR748212 1960 bp mRNA linear HUM 18-JUL-2011 DEFINITION Homo sapiens mRNA for transcription factor 4 isoform B+ delta (TCF4 gene). ACCESSION FR748212 VERSION FR748212.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1960) AUTHORS Sepp M. JOURNAL Submitted (02-DEC-2010) to the INSDC. Sepp M., Department of Gene Technolgy, Tallinn University of Technology, Akadeemia tee 15, 12618 Tallinn, ESTONIA. REFERENCE 2 AUTHORS Sepp M., Kannike K., Eesmaa A., Urb M., Timmusk T. TITLE functional diversity of human basic helix-loop-helix transcription factor TCF4 isoforms generated by alternative 5' exon usage and splicing JOURNAL PLoS One 6(7), e22138-e22138(2011). PUBMED 21789225 FEATURES Location/Qualifiers source 1..1960 /db_xref="H-InvDB:HIT000714774" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..1836 /gene="TCF4" /product="transcription factor 4, isoform B+ delta" /note="exons 3-7, 10-20" /db_xref="GOA:P15884" /db_xref="HGNC:HGNC:11634" /db_xref="InterPro:IPR011598" /db_xref="InterPro:IPR036638" /db_xref="PDB:2KWF" /db_xref="PDB:6OD3" /db_xref="PDB:6OD4" /db_xref="PDB:6OD5" /db_xref="UniProtKB/Swiss-Prot:P15884" /protein_id="CBY80191.1" /translation="MHHQQRMAALGTDKELSDLLDFSAMFSPPVSSGKNGPTSLASGH FTGSNVEDRSSSGSWGNGGHPSPSRNYGDGTPYDHMTSRDLGSHDNLSPPFVNSRIQS KTERGSYSSYGRESNLQGCHQVYAPSASTADYNRDSPGYPSSKPATSTFPSSFFMQDG HHSSDPWSSSSGMNQPGYAGMLGNSSHIPQSSSYCSLHPHERLSYPSHSSADINSSLP PMSTFHRSGTNHYSTSSCTPPANGTDSIMANRGSGAAGSSQTGDALGKALASIYSPDH TNNSFSSNPSTPVGSPPSLSAGTAVWSRNGGQASSSPNYEGPLHSLQSRIEDRLERLD DAIHVLRNHAVGPSTAMPGGHGDMHGIIGPSHNGAMGGLGSGYGTGLLSANRHSLMVG THREDGVALRGSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYRGMPPGLQGQSVSSGS SEIKSDDEGDENLQDTKSSEDKKLDDDKKDIKSITRSRSSNNDDEDLTPEQKAEREKE RRMANNARERLRVRDINEAFKELGRMVQLHLKSDKPQTKLLILHQAVAVILSLEQQVR ERNLNPKAACLKRREEEKVSSEPPPLSLAGPHPGMGDASNHMGQM" variation 1761 /replace="a" /note="SNP rs8766" BASE COUNT 529 a 534 c 468 g 429 t ORIGIN 1 atgcatcacc aacagcgaat ggctgcctta gggacggaca aagagctgag tgatttactg 61 gatttcagtg cgatgttttc acctcctgtg agcagtggga aaaatggacc aacttctttg 121 gcaagtggac attttactgg ctcaaatgta gaagacagaa gtagctcagg gtcctggggg 181 aatggaggac atccaagccc gtccaggaac tatggagatg ggactcccta tgaccacatg 241 accagcaggg accttgggtc acatgacaat ctctctccac cttttgtcaa ttccagaata 301 caaagtaaaa cagaaagggg ctcatactca tcttatggga gagaatcaaa cttacagggt 361 tgccaccagg tctatgctcc atcagcaagc actgccgact acaataggga ctcgccaggc 421 tatccttcct ccaaaccagc aaccagcact ttccctagct ccttcttcat gcaagatggc 481 catcacagca gtgacccttg gagctcctcc agtgggatga atcagcctgg ctatgcagga 541 atgttgggca actcttctca tattccacag tccagcagct actgtagcct gcatccacat 601 gaacgtttga gctatccatc acactcctca gcagacatca attccagtct tcctccgatg 661 tccactttcc atcgtagtgg tacaaaccat tacagcacct cttcctgtac gcctcctgcc 721 aacgggacag acagtataat ggcaaataga ggaagcgggg cagccggcag ctcccagact 781 ggagatgctc tggggaaagc acttgcttcg atctattctc cagatcacac taacaacagc 841 ttttcatcaa acccttcaac tcctgttggc tctcctccat ctctctcagc aggcacagct 901 gtttggtcta gaaatggagg acaggcctca tcgtctccta attatgaagg acccttacac 961 tctttgcaaa gccgaattga agatcgttta gaaagactgg atgatgctat tcatgttctc 1021 cggaaccatg cagtgggccc atccacagct atgcctggtg gtcatgggga catgcatgga 1081 atcattggac cttctcataa tggagccatg ggtggtctgg gctcagggta tggaaccggc 1141 cttctttcag ccaacagaca ttcactcatg gtggggaccc atcgtgaaga tggcgtggcc 1201 ctgagaggca gccattctct tctgccaaac caggttccgg ttccacagct tcctgtccag 1261 tctgcgactt cccctgacct gaacccaccc caggaccctt acagaggcat gccaccagga 1321 ctacaggggc agagtgtctc ctctggcagc tctgagatca aatccgatga cgagggtgat 1381 gagaacctgc aagacacgaa atcttcggag gacaagaaat tagatgacga caagaaggat 1441 atcaaatcaa ttactaggtc aagatctagc aataatgacg atgaggacct gacaccagag 1501 cagaaggcag agcgtgagaa ggagcggagg atggccaaca atgcccgaga gcgtctgcgg 1561 gtccgtgaca tcaacgaggc tttcaaagag ctcggccgca tggtgcagct ccacctcaag 1621 agtgacaagc cccagaccaa gctcctgatc ctccaccagg cggtggccgt catcctcagt 1681 ctggagcagc aagtccgaga aaggaatctg aatccgaaag ctgcgtgtct gaaaagaagg 1741 gaggaagaga aggtgtcctc ggagcctccc cctctctcct tggccggccc acaccctgga 1801 atgggagacg catcgaatca catgggacag atgtaaaagg gtccaagttg ccacattgct 1861 tcattaaaac aagagaccac ttccttaaca gctgtattat cttaaaccca cataaacact 1921 tctccttaac ccccattttt gtaatataag acaagtctga //