LOCUS FN421477 2520 bp mRNA linear HUM 23-JUN-2011
DEFINITION Homo sapiens partial mRNA for plakophilin 3b (PKP3 gene), splice
variant B, cell line HaCaT.
ACCESSION FN421477
VERSION FN421477.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2520)
AUTHORS Schmidt A.
JOURNAL Submitted (23-JUN-2009) to the INSDC. Schmidt A., Institute of
Pathology, Philipps University Marburg, Baldingerstrasse, Marburg,
35033, GERMANY.
REFERENCE 2
AUTHORS Muehmer M., Jaekel J., Moll R., Schmidt A.
TITLE Characterization of a novel splice variant of human Plakophilin 3
gene
JOURNAL Unpublished.
FEATURES Location/Qualifiers
source 1..2520
/db_xref="H-InvDB:HIT000714761"
/organism="Homo sapiens"
/mol_type="mRNA"
/cell_line="HaCaT"
/db_xref="taxon:9606"
CDS <30..>2465
/codon_start=1
/gene="PKP3"
/product="plakophilin 3b"
/note="splice variant b"
/db_xref="GOA:Q9Y446"
/db_xref="HGNC:HGNC:9025"
/db_xref="InterPro:IPR000225"
/db_xref="InterPro:IPR011989"
/db_xref="InterPro:IPR016024"
/db_xref="InterPro:IPR028434"
/db_xref="InterPro:IPR028435"
/db_xref="UniProtKB/Swiss-Prot:Q9Y446"
/experiment="RACE PCR"
/protein_id="CAZ65731.1"
/translation="MESWTPRPSAVASGMSWEAGGIRTTSRPEAGVCSLALPSDLQLD
RRGAEGPEAERLRAARVQEQVRARLLQLGQQPRHNGAAEPEPEAETARGTSRGQYHTL
QAGFSSRSQGLSGDKTSGFRPIAKPAYSPASWSSRSAVDLSCSRRLSSAHNGGSAFGA
AGYGGAQPTPPMPTRPVSFHERGGVGSRADYDTLSLRSLRLGPGGLDDRYSLVSEQLE
PAATSTYRAFAYERQASSSSSRAGGLDWPEATEVSPSRTIRAPAVRTLQRFQSSHRSR
GVGGAVPGAVLEPVARAPSVRSLSLSLADSGHLPDVHGFNSYGSHRTLQRLSSGFDDI
DLPSAVKYLMASDPNLQVLGAAYIQHKCYSDAAAKKQARSLQAVPRLVKLFNHANQEV
QRHATGAMRNLIYDNADNKLALVEENGIFELLRTLREQDDELRKNVTGILWNLSSSDH
LKDRLARDTLEQLTDLVLSPLSGAGGPPLIQQNASEAEIFYNATGFLRNLSSASQATR
QKMRECHGLVDALVTSINHALDAGKCEDKSVENAVCVLRNLSYRLYDEMPPSALQRLE
GRGRRDLAGAPPGEVVGCFTPQSRRLRELPLAADALTFAEVSKDPKGLEWLWSPQIVG
LYNRLLQRCELNRHTTEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTA
DHHQLRSLTGLIRNLSRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEVLVNIIAVL
NNLVVASPIAARDLLYFDGLRKLIFIKKKRDSPDSEKSSRAASSLLANLWQYNKLHRD
FRAKGYRKEDFLGP"
BASE COUNT 452 a 854 c 846 g 368 t
ORIGIN
1 gaggctgccc cgcacgcgcc gggccaggga tggagtcctg gacacctcgg ccgtcagcag
61 tggcctctgg gatgagctgg gaggctggcg ggatccggac cacgagccgg cctgaggccg
121 gcgtgtgctc cctggcgctg ccctctgacc tgcagctgga ccgccggggc gccgaggggc
181 cggaggccga gcggctgcgg gcagcccgcg tccaggagca ggtccgcgcc cgcctcttgc
241 agctgggaca gcagccgcgg cacaacgggg ccgctgagcc cgagcctgag gccgagactg
301 ccagaggcac atccaggggg cagtaccaca ccctgcaggc tggcttcagc tctcgctctc
361 agggcctgag tggggacaag acctcgggct tccggcccat cgccaagccg gcctacagcc
421 cagcctcctg gtcctcccgc tccgccgtgg atctgagctg cagtcggagg ctgagttcag
481 cccacaatgg gggcagcgcc tttggggccg ctgggtacgg gggtgcccag cccacccctc
541 ccatgcccac caggcccgtg tccttccatg agcgcggtgg ggttgggagc cgggccgact
601 atgacacact ctccctgcgc tcgctgcggc tggggcccgg gggcctggac gaccgctaca
661 gcctggtgtc tgagcagctg gagcccgcgg ccacctccac ctacagggcc tttgcgtacg
721 agcgccaggc cagctccagc tccagccggg caggggggct ggactggccc gaggccactg
781 aggtttcccc gagccggacc atccgtgccc ctgccgtgcg gaccctgcag cgattccaga
841 gcagccaccg gagccgcggg gtaggcgggg cagtgccggg ggccgtcctg gagccagtgg
901 ctcgagcgcc atctgtgcgc agcctcagcc tcagcctggc tgactcgggc cacctgccgg
961 acgtgcatgg gttcaacagc tacggtagcc accgaaccct gcagagactc agcagcggtt
1021 ttgatgacat tgacctgccc tcagcagtca agtacctcat ggcttcagac cccaacctgc
1081 aggtgctggg agcggcctac atccagcaca agtgctacag cgatgcagcc gccaagaagc
1141 aggcccgcag ccttcaggcc gtgcctaggc tggtgaagct cttcaaccac gccaaccagg
1201 aagtgcagcg ccatgccaca ggtgccatgc gcaacctcat ctacgacaac gctgacaaca
1261 agctggccct ggtggaggag aacgggatct tcgagctgct gcggacactg cgggagcagg
1321 atgatgagct tcgcaaaaat gtcacaggga tcctgtggaa cctttcatcc agcgaccacc
1381 tgaaggaccg cctggccaga gacacgctgg agcagctcac agacctggtg ttgagccccc
1441 tgtcgggggc tgggggtccc cccctcatcc agcagaacgc ctcggaggcg gagatcttct
1501 acaacgccac cggcttcctc aggaacctca gctcagcctc tcaggccact cgccagaaga
1561 tgcgggagtg ccacgggctg gtggacgccc tggtcacctc tatcaaccac gccctggacg
1621 cgggcaaatg cgaggacaag agcgtggaga acgcggtgtg cgtcctgcgg aacctgtcct
1681 accgcctcta cgacgagatg ccgccgtccg cgctgcagcg gctggagggt cgcggccgca
1741 gggacctggc gggggcgccg ccgggagagg tcgtgggctg cttcacgccg cagagccggc
1801 ggctgcgcga gctgcccctc gccgccgatg cgctcacctt cgcggaggtg tccaaggacc
1861 ccaagggcct cgagtggctg tggagccccc agatcgtggg gctgtacaac cggctgctgc
1921 agcgctgcga gctcaaccgg cacacgacgg aggcggccgc cggggcgctg cagaacatca
1981 cggcaggcga ccgcaggtgg gcgggggtgc tgagccgcct ggccctggag caggagcgta
2041 ttctgaaccc cctgctagac cgtgtcagga ccgccgacca ccaccagctg cgctcactga
2101 ctggcctcat ccgaaacctg tctcggaacg ctaggaacaa ggacgagatg tccacgaagg
2161 tggtgagcca cctgatcgag aagctgccgg gcagcgtggg tgagaagtcg cccccagccg
2221 aggtgctggt caacatcata gctgtgctca acaacctggt ggtggccagc cccatcgctg
2281 cccgagacct gctgtatttt gacggactcc gaaagctcat cttcatcaag aagaagcggg
2341 acagccccga cagtgagaag tcctcccggg cagcatccag cctcctggcc aacctgtggc
2401 agtacaacaa gctccaccgt gacttccggg cgaagggcta tcggaaggag gacttcctgg
2461 gcccataggt gaagccttct ggaggagaag gtgacgtggc ccagcgtcca agggacagac
//