LOCUS       EU434650                2013 bp    mRNA    linear   HUM 25-FEB-2008
DEFINITION  Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1
            variant (HCCS1) mRNA, complete cds, alternatively spliced.
ACCESSION   EU434650
VERSION     EU434650.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Kang,X.D., Sun,J., Ni,Z.H. and Xie,S.
  TITLE     A deletion polymorphism of the putative tumor suppressor gene HCCS1
            in Chinese gastric cancer
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Kang,X.D., Sun,J., Ni,Z.H. and Xie,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2008) Central Laboratory, Putuo Hospital
            Affiliated Shanghai University of Traditional Chinese Medicine,
            No.164 Lanxi Road, Shanghai 200062, China
FEATURES             Location/Qualifiers
     source          1..2013
                     /db_xref="H-InvDB:HIT000484977"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /map="17p13"
                     /tissue_type="gastric cancer tissue"
                     /PCR_primers="fwd_seq: atgatggaggaggaggaactg, rev_seq:
                     ctacgtccatctcacctgttctg"
                     /PCR_primers="fwd_seq: gccaagattatgcgtaccagag, rev_seq:
                     catctctggtgttggctcatc"
     gene            1..2013
                     /gene="HCCS1"
     CDS             1..2013
                     /gene="HCCS1"
                     /note="similar to Homo sapiens vacuolar protein sorting 53
                     (VPS53); lacks exon 5; alternatively spliced"
                     /codon_start=1
                     /product="gastric cancer hepatocellular carcinoma
                     suppressor 1 variant"
                     /protein_id="ACA21425.1"
                     /translation="MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNA
                     VEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQVKEITRD
                     IKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFH
                     KYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANI
                     LDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRM
                     FPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFS
                     GCTLTDGTLKKRESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIV
                     SKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYK
                     KCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKE
                     GSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFS
                     TVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIR
                     DNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQVRWT"
     variation       81
                     /gene="HCCS1"
                     /replace="c"
     variation       1037
                     /gene="HCCS1"
                     /replace="t"
     variation       1309
                     /gene="HCCS1"
                     /replace="a"
     variation       1437
                     /gene="HCCS1"
                     /replace="t"
     variation       1471
                     /gene="HCCS1"
                     /replace="c"
     variation       1487
                     /gene="HCCS1"
                     /replace="a"
     variation       1879^1880
                     /gene="HCCS1"
                     /note="microdeletion"
     variation       1911
                     /gene="HCCS1"
                     /replace="a"
     variation       1929
                     /gene="HCCS1"
                     /replace="g"
     variation       1931..1932
                     /gene="HCCS1"
                     /replace="aa"
BASE COUNT          574 a          505 c          502 g          432 t
ORIGIN      
        1 atgatggagg aggaggaact ggagttcgtg gaggagctgg aagccgtgct gcagctcacg
       61 cccgaggtgc agctggccat tgagcaggtg tttccaagcc aggaccctct agatcgagca
      121 gatttcaatg ctgttgagta tatcaatacc ctgttcccaa ccgagcaatc tctggcgaac
      181 atagacgaag tcgtgaacaa aattaggctg aaaataagga gactggatga caatattcga
      241 actgttgtaa gaggtcagac gaacgtgggg caggatggac ggcaagtgaa agaaatcacc
      301 cgtgatatta agcaattaga tcacgccaaa cgccacctga ccacctcaat caccacactg
      361 aaccacctgc acatgctggc aggaggtgtc gactccctcg aagccatgac caggcgaaga
      421 caatacggag aagttgctaa tctccttcag ggtgtgatga atgtcctgga gcacttccac
      481 aagtatatgg ggattccgca gatccggcag ctttccgaaa gagtgaaggc tgcacagact
      541 gagttaggac agcaaatcct ggcagatttt gaagaagcgt ttccttccca gggcaccaag
      601 agaccaggag gacccagcaa tgttctacga gatgcatgtc tggttgctaa tattctagat
      661 cccaggatca aacaggaaat catcaaaaag tttattaaac agcatctgtc agagtatctg
      721 gtactttttc aagaaaacca agatgttgcc tggctggaca aaatcgacag acgctatgcc
      781 tggataaaac gccagcttgt ggactatgag gagaaatacg gccgcatgtt tccacgtgag
      841 tggtgcatgg ctgagaggat tgcggtggaa ttttgccatg tgacaagggc agaacttgcc
      901 aagattatgc gtaccagagc gaaggaaatt gaagtgaaat tgcttctttt tgctattcaa
      961 agaacaacta actttgaggg gtttcttgca aaacgcttct ccggctgcac cctgaccgat
     1021 gggaccctga aaaagcgtga gtctccaccc ccatctacca atcccttcct ggaagatgag
     1081 ccaacaccag agatggagga actggcaacg gagaaaggag atttagatca accaaagaag
     1141 cctaaagccc cagacaatcc atttcatggc attgtttcca agtgttttga gcctcatctc
     1201 tacgtgtata tcgaatccca agacaagaac ctcggagagc tgatagatcg gtttgtggct
     1261 gatttcaaag cccaggggcc acctaagccc aacactgatg aagggggtgc cgtgctcccc
     1321 agctgcgccg acctctttgt ctactacaag aagtgcatgg tgcaatgctc tcagctcagt
     1381 actggggagc ccatgatcgc cctgaccacc attttccaga agtacctccg agaatacgcc
     1441 tggaaaatcc tctctggcaa cctgcccaaa accacaacca gcagtggagg actgactatc
     1501 agcagcctcc tcaaggaaaa ggagggctca gaagtagcca agttcactct ggaggagctc
     1561 tgcctcatct gtaacatcct gagcacggca gagtactgtc tggccaccac ccagcagcta
     1621 gaagaaaaac tcaaagaaaa agtggatgta agtctgattg aacgaatcaa tctgactgga
     1681 gagatggaca cgttcagcac cgtcatctcc agcagtattc agctgctggt tcaggatctg
     1741 gatgctgcct gtgatcctgc cctgactgcc atgagcaaga tgcagtggca gaacgtggag
     1801 cacgttggtg accagagccc ctacgtcacc tctgtcattc tgcacatcaa gcagaacgtc
     1861 cccatcatcc gtgacaacct ggcttccaca cgcaagtact tcactcagtt ctgcgttaaa
     1921 tttgcaaact ccttcattcc caaattcatc acccacctct tcaagtgcaa gccaattagc
     1981 atggtgggag cagaacaggt gagatggacg tag
//