LOCUS EU434650 2013 bp mRNA linear HUM 25-FEB-2008 DEFINITION Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1 variant (HCCS1) mRNA, complete cds, alternatively spliced. ACCESSION EU434650 VERSION EU434650.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2013) AUTHORS Kang,X.D., Sun,J., Ni,Z.H. and Xie,S. TITLE A deletion polymorphism of the putative tumor suppressor gene HCCS1 in Chinese gastric cancer JOURNAL Unpublished REFERENCE 2 (bases 1 to 2013) AUTHORS Kang,X.D., Sun,J., Ni,Z.H. and Xie,S. TITLE Direct Submission JOURNAL Submitted (29-JAN-2008) Central Laboratory, Putuo Hospital Affiliated Shanghai University of Traditional Chinese Medicine, No.164 Lanxi Road, Shanghai 200062, China FEATURES Location/Qualifiers source 1..2013 /db_xref="H-InvDB:HIT000484977" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="17" /map="17p13" /tissue_type="gastric cancer tissue" /PCR_primers="fwd_seq: atgatggaggaggaggaactg, rev_seq: ctacgtccatctcacctgttctg" /PCR_primers="fwd_seq: gccaagattatgcgtaccagag, rev_seq: catctctggtgttggctcatc" gene 1..2013 /gene="HCCS1" CDS 1..2013 /gene="HCCS1" /note="similar to Homo sapiens vacuolar protein sorting 53 (VPS53); lacks exon 5; alternatively spliced" /codon_start=1 /product="gastric cancer hepatocellular carcinoma suppressor 1 variant" /protein_id="ACA21425.1" /translation="MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNA VEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQVKEITRD IKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFH KYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANI LDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRM FPREWCMAERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFS GCTLTDGTLKKRESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIV SKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYK KCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKE GSEVAKFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFS TVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIR DNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQVRWT" variation 81 /gene="HCCS1" /replace="c" variation 1037 /gene="HCCS1" /replace="t" variation 1309 /gene="HCCS1" /replace="a" variation 1437 /gene="HCCS1" /replace="t" variation 1471 /gene="HCCS1" /replace="c" variation 1487 /gene="HCCS1" /replace="a" variation 1879^1880 /gene="HCCS1" /note="microdeletion" variation 1911 /gene="HCCS1" /replace="a" variation 1929 /gene="HCCS1" /replace="g" variation 1931..1932 /gene="HCCS1" /replace="aa" BASE COUNT 574 a 505 c 502 g 432 t ORIGIN 1 atgatggagg aggaggaact ggagttcgtg gaggagctgg aagccgtgct gcagctcacg 61 cccgaggtgc agctggccat tgagcaggtg tttccaagcc aggaccctct agatcgagca 121 gatttcaatg ctgttgagta tatcaatacc ctgttcccaa ccgagcaatc tctggcgaac 181 atagacgaag tcgtgaacaa aattaggctg aaaataagga gactggatga caatattcga 241 actgttgtaa gaggtcagac gaacgtgggg caggatggac ggcaagtgaa agaaatcacc 301 cgtgatatta agcaattaga tcacgccaaa cgccacctga ccacctcaat caccacactg 361 aaccacctgc acatgctggc aggaggtgtc gactccctcg aagccatgac caggcgaaga 421 caatacggag aagttgctaa tctccttcag ggtgtgatga atgtcctgga gcacttccac 481 aagtatatgg ggattccgca gatccggcag ctttccgaaa gagtgaaggc tgcacagact 541 gagttaggac agcaaatcct ggcagatttt gaagaagcgt ttccttccca gggcaccaag 601 agaccaggag gacccagcaa tgttctacga gatgcatgtc tggttgctaa tattctagat 661 cccaggatca aacaggaaat catcaaaaag tttattaaac agcatctgtc agagtatctg 721 gtactttttc aagaaaacca agatgttgcc tggctggaca aaatcgacag acgctatgcc 781 tggataaaac gccagcttgt ggactatgag gagaaatacg gccgcatgtt tccacgtgag 841 tggtgcatgg ctgagaggat tgcggtggaa ttttgccatg tgacaagggc agaacttgcc 901 aagattatgc gtaccagagc gaaggaaatt gaagtgaaat tgcttctttt tgctattcaa 961 agaacaacta actttgaggg gtttcttgca aaacgcttct ccggctgcac cctgaccgat 1021 gggaccctga aaaagcgtga gtctccaccc ccatctacca atcccttcct ggaagatgag 1081 ccaacaccag agatggagga actggcaacg gagaaaggag atttagatca accaaagaag 1141 cctaaagccc cagacaatcc atttcatggc attgtttcca agtgttttga gcctcatctc 1201 tacgtgtata tcgaatccca agacaagaac ctcggagagc tgatagatcg gtttgtggct 1261 gatttcaaag cccaggggcc acctaagccc aacactgatg aagggggtgc cgtgctcccc 1321 agctgcgccg acctctttgt ctactacaag aagtgcatgg tgcaatgctc tcagctcagt 1381 actggggagc ccatgatcgc cctgaccacc attttccaga agtacctccg agaatacgcc 1441 tggaaaatcc tctctggcaa cctgcccaaa accacaacca gcagtggagg actgactatc 1501 agcagcctcc tcaaggaaaa ggagggctca gaagtagcca agttcactct ggaggagctc 1561 tgcctcatct gtaacatcct gagcacggca gagtactgtc tggccaccac ccagcagcta 1621 gaagaaaaac tcaaagaaaa agtggatgta agtctgattg aacgaatcaa tctgactgga 1681 gagatggaca cgttcagcac cgtcatctcc agcagtattc agctgctggt tcaggatctg 1741 gatgctgcct gtgatcctgc cctgactgcc atgagcaaga tgcagtggca gaacgtggag 1801 cacgttggtg accagagccc ctacgtcacc tctgtcattc tgcacatcaa gcagaacgtc 1861 cccatcatcc gtgacaacct ggcttccaca cgcaagtact tcactcagtt ctgcgttaaa 1921 tttgcaaact ccttcattcc caaattcatc acccacctct tcaagtgcaa gccaattagc 1981 atggtgggag cagaacaggt gagatggacg tag //