LOCUS EU434649 1269 bp mRNA linear HUM 25-FEB-2008 DEFINITION Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1 variant (HCCS1) mRNA, complete cds, alternatively spliced. ACCESSION EU434649 VERSION EU434649.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1269) AUTHORS Kang,X.D., Sun,J., Ni,Z.H. and Xie,S. TITLE A deletion polymorphism of the putative tumor suppressor gene HCCS1 in Chinese gastric cancer JOURNAL Unpublished REFERENCE 2 (bases 1 to 1269) AUTHORS Kang,X.D., Sun,J., Ni,Z.H. and Xie,S. TITLE Direct Submission JOURNAL Submitted (29-JAN-2008) Central Laboratory, Putuo Hospital Affiliated Shanghai University of Traditional Chinese Medicine, No.164 Lanxi Road, Shanghai 200062, China FEATURES Location/Qualifiers source 1..1269 /db_xref="H-InvDB:HIT000484976" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="17" /map="17p13" /tissue_type="gastric cancer tissue" /PCR_primers="fwd_seq: atgatggaggaggaggaactg, rev_seq: ctacgtccatctcacctgttctg" /PCR_primers="fwd_seq: gccaagattatgcgtaccagag, rev_seq: catctctggtgttggctcatc" gene 1..1269 /gene="HCCS1" CDS 1..1269 /gene="HCCS1" /note="lacks exons 5 through 11; includes exon 19; similar to Homo sapiens vacuolar protein sorting 53 (VPS53); alternatively spliced" /codon_start=1 /product="gastric cancer hepatocellular carcinoma suppressor 1 variant" /protein_id="ACA21424.1" /translation="MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNA VEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQKKRESPP PSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIVSKCFEPHLYVYIESQD KNLGELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKKCMVQCSQLSTGEPMI ALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLIC NILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSIQLLVQDLDA ACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVK FANSFIPKFITHLFKCKPISMVGAEQVRWT" variation 293 /gene="HCCS1" /replace="t" variation 565 /gene="HCCS1" /replace="a" variation 693 /gene="HCCS1" /replace="t" variation 727 /gene="HCCS1" /replace="c" variation 743 /gene="HCCS1" /replace="a" variation 1135^1136 /gene="HCCS1" /note="microdeletion" variation 1167 /gene="HCCS1" /replace="a" variation 1185 /gene="HCCS1" /replace="g" variation 1187..1188 /gene="HCCS1" /replace="aa" BASE COUNT 356 a 334 c 317 g 262 t ORIGIN 1 atgatggagg aggaggaact ggagttcgtg gaggagctgg aagccgtgct gcagctcacg 61 cccgaggtgc agctggccat cgagcaggtg tttccaagcc aggaccctct agatcgagca 121 gatttcaatg ctgttgagta tatcaatacc ctgttcccaa ccgagcaatc tctggcgaac 181 atagacgaag tcgtgaacaa aattaggctg aaaataagga gactggatga caatattcga 241 actgttgtaa gaggtcagac gaacgtgggg caggatggac ggcaaaaaaa gcgtgagtct 301 ccacccccat ctaccaatcc cttcctggaa gatgagccaa caccagagat ggaggaactg 361 gcaacggaga aaggagattt agatcaacca aagaagccta aagccccaga caatccattt 421 catggcattg tttccaagtg ttttgagcct catctctacg tgtatatcga atcccaagac 481 aagaacctcg gagagctgat agatcggttt gtggctgatt tcaaagccca ggggccacct 541 aagcccaaca ctgatgaagg gggtgccgtg ctccccagct gcgccgacct ctttgtctac 601 tacaagaagt gcatggtgca atgctctcag ctcagtactg gggagcccat gatcgccctg 661 accaccattt tccagaagta cctccgagaa tacgcctgga aaatcctctc tggcaacctg 721 cccaaaacca caaccagcag tggaggactg actatcagca gcctcctcaa ggaaaaggag 781 ggctcagaag tagccaagtt cactctggag gagctctgcc tcatctgtaa catcctgagc 841 acggcagagt actgtctggc caccacccag cagctagaag aaaaactcaa agaaaaagtg 901 gatgtaagtc tgattgaacg aatcaatctg actggagaga tggacacgtt cagcaccgtc 961 atctccagca gtattcagct gctggttcag gatctggatg ctgcctgtga tcctgccctg 1021 actgccatga gcaagatgca gtggcagaac gtggagcacg ttggtgacca gagcccctac 1081 gtcacctctg tcattctgca catcaagcag aacgtcccca tcatccgtga caacctggct 1141 tccacacgca agtacttcac tcagttctgc gttaaatttg caaactcctt cattcccaaa 1201 ttcatcaccc acctcttcaa gtgcaagcca attagcatgg tgggagcaga acaggtgaga 1261 tggacgtag //