LOCUS EU434648 1903 bp mRNA linear HUM 25-FEB-2008 DEFINITION Homo sapiens gastric cancer hepatocellular carcinoma suppressor 1 variant (HCCS1) mRNA, complete cds, alternatively spliced. ACCESSION EU434648 VERSION EU434648.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1903) AUTHORS Kang,X.D., Sun,J., Ni,Z.H. and Xie,S. TITLE A deletion polymorphism of the putative tumor suppressor gene HCCS1 in Chinese gastric cancer JOURNAL Unpublished REFERENCE 2 (bases 1 to 1903) AUTHORS Kang,X.D., Sun,J., Ni,Z.H. and Xie,S. TITLE Direct Submission JOURNAL Submitted (29-JAN-2008) Central Laboratory, Putuo Hospital Affiliated Shanghai University of Traditional Chinese Medicine, No.164 Lanxi Road, Shanghai 200062, China FEATURES Location/Qualifiers source 1..1903 /db_xref="H-InvDB:HIT000484975" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="17" /map="17p13" /tissue_type="gastric cancer tissue" /PCR_primers="fwd_seq: atgatggaggaggaggaactg, rev_seq: ctacgtccatctcacctgttctg" /PCR_primers="fwd_seq: gccaagattatgcgtaccagag, rev_seq: catctctggtgttggctcatc" gene 1..1903 /gene="HCCS1" CDS 1..1644 /gene="HCCS1" /note="lacks exon 19 and part of exon 16; similar to Homo sapiens vacuolar protein sorting 53 (VPS53); alternatively spliced" /codon_start=1 /product="gastric cancer hepatocellular carcinoma suppressor 1 variant" /protein_id="ACA21423.1" /translation="MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNA VEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQK AIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVD SLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILAD FEEAFPSQGTKVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMAERIAVEFCHVT RAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKRESPPPST NPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIVSKCFEPHLYVYIESQDKNL GELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKKCMVQCSQLSTGEPMIALT TIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTLEELCLICNIL STAEYCLATTQQLEEKLKEKVDRHLQQYSAAGSGSGCCL" variation 980 /gene="HCCS1" /replace="t" variation 1252 /gene="HCCS1" /replace="a" variation 1380 /gene="HCCS1" /replace="t" variation 1414 /gene="HCCS1" /replace="c" variation 1430 /gene="HCCS1" /replace="a" variation 1769^1770 /gene="HCCS1" /note="microdeletion" variation 1801 /gene="HCCS1" /replace="a" variation 1818 /gene="HCCS1" /replace="c" variation 1820 /gene="HCCS1" /replace="aa" BASE COUNT 544 a 485 c 477 g 397 t ORIGIN 1 atgatggagg aggaggaact ggagttcgtg gaggagctgg aagccgtgct gcagctcacg 61 cccgaggtgc agctggccat cgagcaggtg tttccaagcc aggaccctct agatcgagca 121 gatttcaatg ctgttgagta tatcaatacc ctgttcccaa ccgagcaatc tctggcgaac 181 atagacgaag tcgtgaacaa aattaggctg aaaataagga gactggatga caatattcga 241 actgttgtaa gaggtcagac gaacgtgggg caggatggac ggcaagcgct tgaagaggct 301 cagaaagcta tccaacaact ctttggcaaa atcaaagata tcaaagacaa agctgaaaaa 361 tcagagcaaa tggtgaaaga aatcacccgt gatattaagc aattagatca cgccaaacgc 421 cacctgacca cctcaatcac cacactgaac cacctgcaca tgctggcagg aggtgtcgac 481 tccctcgaag ccatgaccag gcgaagacaa tacggagaag ttgctaatct ccttcagggt 541 gtgatgaatg tcctggagca cttccacaag tatatgggga ttccgcagat ccggcagctt 601 tccgaaagag tgaaggctgc acagactgag ttaggacagc aaatcctggc agattttgaa 661 gaagcgtttc cttcccaggg caccaaggtt gcctggctgg acaaaatcga cagacgctat 721 gcctggataa aacgccagct tgtggactat gaggagaaat acggccgcat gtttccacgt 781 gagtggtgca tggctgagag gattgcggtg gaattttgcc atgtgacaag ggcagaactt 841 gccaagatta tgcgtaccag agcgaaggaa attgaagtga aattgcttct ttttgctatt 901 caaagaacaa ctaactttga ggggtttctt gcaaaacgct tctccggctg caccctgacc 961 gatgggaccc tgaaaaagcg tgagtctcca cccccatcta ccaatccctt cctggaagat 1021 gagccaacac cagagatgga ggaactggca acggagaaag gagatttaga tcaaccaaag 1081 aagcctaaag ccccagacaa tccatttcat ggcattgttt ccaagtgttt tgagcctcat 1141 ctctacgtgt atatcgaatc ccaagacaag aacctcggag agctgataga tcggtttgtg 1201 gctgatttca aagcccaggg gccacctaag cccaacactg atgaaggggg tgccgtgctc 1261 cccagctgcg ccgacctctt tgtctactac aagaagtgca tggtgcaatg ctctcagctc 1321 agtactgggg agcccatgat cgccctgacc accattttcc agaagtacct ccgagaatac 1381 gcctggaaaa tcctctctgg caacctgccc aaaaccacaa ccagcagtgg aggactgact 1441 atcagcagcc tcctcaagga aaaggagggc tcagaagtag ccaagttcac tctggaggag 1501 ctctgcctca tctgtaacat cctgagcacg gcagagtact gtctggccac cacccagcag 1561 ctagaagaaa aactcaaaga aaaagtggat cgtcatctcc agcagtattc agctgctggt 1621 tcaggatctg gatgctgcct gtgatcctgc cctgactgcc atgagcaaga tgcagtggca 1681 gaacgtggag cacgttggtg accagagccc ctacgtcacc tctgtcattc tgcacatcaa 1741 gcagaacgtc cccatcatcc gtgacaacct ggcttccaca cgcaagtact tcactcagtt 1801 ctgcgttaaa tttgcaaact ccttcattcc caaattcatc acccacctct tcaagtgcaa 1861 gccaattagc atggtgggag cagaacaggt gagatggacg tag //