LOCUS EU054308 3426 bp mRNA linear HUM 01-OCT-2007
DEFINITION Homo sapiens EphB6 variant protein mRNA, complete cds,
alternatively spliced.
ACCESSION EU054308
VERSION EU054308.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3426)
AUTHORS Jin,M., Komohara,Y., Shichijo,S., Nikawa,J., Miyamoto,S.,
Yamanaka,R., Itoh,K. and Yamada,A.
TITLE Identification of EphB6 variant-derived epitope peptides recognized
by cytotoxic T lymphocytes from HLA-A24+ malignant glioma patients
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3426)
AUTHORS Jin,M., Komohara,Y., Itoh,K. and Yamada,A.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2007) Immunology, Kurume University, Ashahi-machi
67, Kurume, Fukuoka 8300011, Japan
FEATURES Location/Qualifiers
source 1..3426
/db_xref="H-InvDB:HIT000484297"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/cell_line="T98G"
CDS 1..1578
/note="putative secretory form of EphB6; Eph family
receptor protein; retains a portion of intron 9 resulting
in alternative C-terminal sequence; alternatively spliced"
/codon_start=1
/product="EphB6 variant protein"
/protein_id="ABV55388.1"
/translation="MVCSLWVLLLVSSVLALEEVLLDTTGETSEIGWLTYPPGGWDEV
SVLDDQRRLTRTFEACHVAGAPPGTGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSL
GVSGGTCRETFTLYYRQAEEPDSPDSVSSWHLKRWTKVDTIAADESFPSSSSSSSSSS
SAAWAVGPHGAGQRAGLQLNVKERSFGPLTQRGFYVAFQDTGACLALVAVRLFSYTCP
AVLRSFASFPETQASGAGGASLVAAVGTCVAHAEPEEDGVGGQAGGSPPRLHCNGEGK
WMVAVGGCRCQPGYQPARGDKACQACPRGLYKSSAGNAPCSPCPARSHAPNPAAPVCP
CLEGFYRASSDPPEAPCTGPPSAPQELWFEVQGSALMLHWRLPRELGGRGDLLFNVVC
KECEGRQEPASGGGGTCHRCRDEVHFDPRQRGLTESRVLVGGLRAHVPYILEVQAVNG
VSELSPDPPQAAAINVSTSHEGELFSLAFRIPCLRSFEPPSLLLISSLVHPCRPPLKA
DPAPRDSYPHNNFPFAL"
BASE COUNT 664 a 1079 c 1007 g 676 t
ORIGIN
1 atggtgtgta gcctatgggt gctgctcctg gtgtcttcag ttctggctct ggaagaggta
61 ttgctggaca ccaccggaga gacatctgag attggctggc tcacctaccc accagggggg
121 tgggacgagg tgagtgttct ggacgaccag cgacgcctga ctcggacctt tgaggcatgt
181 catgtggcag gggcccctcc aggcaccggg caggacaatt ggttgcagac acactttgtg
241 gagcggcgcg gggcccagag ggcgcacatt cgactccact tctctgtgcg ggcatgctcc
301 agcctgggtg tgagcggcgg cacctgccgg gagaccttca ccctttacta ccgtcaggct
361 gaggagcccg acagccctga cagcgtttcc tcctggcacc tcaaacgctg gaccaaggtg
421 gacacaattg cagcagacga gagctttccc tcctcctcct cctcctcctc ctcttcttcc
481 tctgcagcgt gggctgtggg accccacggg gctgggcagc gggctggact gcaactgaac
541 gtcaaagagc ggagctttgg gcctctcacc caacgcggct tctacgtggc cttccaggac
601 acgggggcct gcctggccct ggtcgctgtc aggctcttct cctacacctg ccctgccgtg
661 ctccgatcct ttgcttcctt tccagagacg caggccagtg gggctggggg ggcctccctg
721 gtggcagctg tgggcacctg tgtggctcat gcagagccag aggaggatgg agtagggggc
781 caggcaggag gcagcccccc caggctgcac tgcaacgggg agggcaagtg gatggtagct
841 gtcgggggct gccgctgcca gcctggatac caaccagcac gaggagacaa ggcctgccaa
901 gcctgcccac gggggctcta taagtcttct gctgggaatg ctccctgctc accatgccct
961 gcccgcagtc atgctcccaa cccagcagcc cccgtttgcc cctgcctgga gggcttctac
1021 cgggccagtt ccgacccacc agaggccccc tgcactggtc ctccatcggc tccccaggag
1081 ctttggtttg aggtgcaagg ctcagcactc atgctacact ggcgcctgcc tcgggagctg
1141 gggggtcgag gggacctgct cttcaatgtc gtgtgcaagg agtgtgaagg ccgccaggaa
1201 cctgccagcg gtggtggggg cacttgtcac cgctgcaggg atgaggtcca cttcgaccct
1261 cgccagagag gcctgactga gagccgagtg ttagtggggg gactccgggc acacgtaccc
1321 tacatcttag aggtgcaggc tgttaatggg gtgtctgagc tcagccctga ccctcctcag
1381 gctgcagcca tcaatgtcag caccagccat gaaggtgagc tcttttcctt ggccttcagg
1441 atcccctgcc tccgctcctt tgagccccct tccctactcc tgatctccag cctggtccac
1501 ccctgccgcc ctcccctcaa ggctgatcct gctcccaggg actcctatcc ccataataat
1561 tttccttttg cactctagtg ccctctgctg tccctgtggt gcaccaggtg agccgggcat
1621 ccaacagcat cacggtgtcc tggccgcagc ccgaccagac caatgggaac atcctggact
1681 atcagctccg ctactatgac caggcagaag acgaatccca ctccttcacc ctgaccagcg
1741 agaccaacac tgccaccgtg acacagctga gccctggcca catctatggt ttccaggtgc
1801 gggcccggac tgctgccggc cacggcccct acgggggcaa agtctatttc cagacacttc
1861 ctcaagggga gctgtcttcc cagcttccgg aaagactctc cttggtgatc ggctccatcc
1921 tgggggcttt ggccttcctc ctgctggcag ccatcaccgt gctggcggtc gtcttccagc
1981 ggaagcggcg tgggactggc tacacggagc agctgcagca atacagcagc ccaggactcg
2041 gggtgaagta ttacatcgac ccctccacct acgaggaccc ctgtcaggcc atccgagaac
2101 ttgcccggga agtcgatcct gcttatatca agattgagga ggtcattggg acaggctctt
2161 ttggagaagt gcgccagggc cgcctgcagc cacggggacg gagggagcag actgtggcca
2221 tccaggccct gtgggccggg ggcgccgaaa gcctgcagat gaccttcctg ggccgggccg
2281 cagtgctggg tcagttccag caccccaaca tcctgcggct ggagggcgtg gtcaccaaga
2341 gccgacccct catggtgctg acggagttca tggagcttgg ccccctggac agcttcctca
2401 ggcagcggga gggccagttc agcagcctgc agctggtggc catgcagcgg ggagtggctg
2461 ctgccatgca gtacctgtcc agctttgcct tcgtccatcg ctcgctgtct gcccacagcg
2521 tgctggtgaa tagccacttg gtgtgcaagg tggcccgtct tggccacagt cctcagggcc
2581 caagttgttt gcttcgctgg gcagccccag aggtcattgc acatggaaag catacaacat
2641 ccagtgatgt ctggagcttt gggatactca tgtgggaagt gatgagttat ggagaacggc
2701 cttactggga catgagtgag caggaggtac taaatgcaat agagcaggag ttccggctgc
2761 ccccgcctcc aggctgtcct cctggattac atctacttat gttggacact tggcagaagg
2821 accgtgcccg gcggcctcat tttgaccagc tggtggctgc atttgacaag atgatccgca
2881 agccagatac cctgcaggct ggcggggacc caggggaaag gccttcccag gcccttctga
2941 cccctgtggc cctggacttt ccttgtctgg actcacccca ggcctggctt tcagccattg
3001 gactggagtg ctaccaggac aacttctcca agtttggcct ctgtaccttc agtgatgtgg
3061 ctcagctcag cctagaagac ctgcctgccc tgggcatcac cctggctggc caccagaaga
3121 agctgctgca ccacatccag ctccttcagc aacacctgag gcagcagggc tcagtggagg
3181 tctgagaatg acgatacccg tgactcagcc ctggacactg gtccgagaag ggacatgtgg
3241 gacgtgagcc gggctccaac agcctctgtg agagatgccc cacaccaaac ccaaccctcc
3301 cgatggctgc attccctggt cctccgcctc tccaccagcc ccctcctcat taaagggaaa
3361 gaagggaatt tgcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3421 aaaaaa
//