LOCUS EF068222 8734 bp mRNA linear HUM 12-APR-2007 DEFINITION Homo sapiens jumonji domain-containing 1 C splice variant (JMJD1C) mRNA, complete cds, alternatively spliced. ACCESSION EF068222 VERSION EF068222.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8734) AUTHORS Wolf,S.S., Patchev,V.K. and Obendorf,M. TITLE A novel variant of the putative demethylase gene, s-JMJD1C, is a coactivator of the AR JOURNAL Arch. Biochem. Biophys. 460 (1), 56-66 (2007) PUBMED 17353003 REFERENCE 2 (bases 1 to 8734) AUTHORS Wolf,S.S. and Obendorf,M. TITLE Direct Submission JOURNAL Submitted (17-OCT-2006) MHC2, Jenapharm GmbH & Co. KG, Otto Schott Str 15, Jena 07745, Germany FEATURES Location/Qualifiers source 1..8734 /db_xref="H-InvDB:HIT000394787" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="10" /map="10q21.2" gene 1..8734 /gene="JMJD1C" CDS 843..7919 /gene="JMJD1C" /note="putative demethylase; androgen receptor interacting protein; alternatively spliced" /codon_start=1 /product="jumonji domain-containing 1 C splice variant" /protein_id="ABK64187.1" /translation="MQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQ VLEPQNVDPSMVQMTFLDDVVHSLLKGENIGITSRRRSRANQNVNAVHSHYTRAQANS PRPAMNSQAAVPKQNTHQQQQQRSIRPNKRKGSDSSIPDEEKMKEEKYDYISRGENPK GKNKHLMNKRRKPEEDEKKLNMKRLRTDNVSDFSESSDSENSNKRIIDNSSEQKPENE LKNKNTSKINGEEGKPHNNEKAGEETLKNSQPPWDQIQEDKKHEEAEKRKSVDTQLQE DMIIHSSEQSTVSDHNSNDLLPQECNMDKTHTMELLPKEKFVSRPPTPKCVIDITNDT NLEKVAQENSSTFGLQTLQKMDPNVSDSKHSIANAKFLETAKKDSDQSWVSDVVKVDL TQSSVTNASSGNDHLNMEKEKYVSYISPLSAVSVMEDKLHKRSPPPETIKSKLNTSVD THKIKSSPSPEVVKPKITHSPDSVKSKATYVNSQATGERRLANKIEHELSRCSFHPIP TRSSTLETTKSPLIIDKNEHFTVYRDPALIGSETGANHISPFLSQHPFPLHSSSHRTC LNPGTHHPALTPAPHLLAGSSSQTPLPTINTHPLTSGPHHAVHHPHLLPTVLPGVPTA SLLGGHPRLESAHASSLSHLALAHQQQQQLLQHQSPHLLGQAHPSASYNQLGLYPIIW QYPNGTHAYSGLGLPSSKWVHPENAVNAEASLRRNSPSPWLHQPTPVTSADGIGLLSH IPVRPSSAEPHRPLKITAHSSPPLTKTLVDHHKEELERKAFMEPLRSVASTSAKNDLD LNRSQTGKDCHLHRHFVDPVLNQLQRPPQETGERLNKYKEEHRRILQESIDVAPFTTK IKGLEGERENYSRVASSSSSPKSHIIKQDMDVERSVSDLYKMKHSVPQSLPQSNYFTT LSNSVVNEPPRSYPSKEVSNIYGDKQSNALAAAAANPQTLTSFITSLSKPPPLIKHQP ESEGLVGKIPEHLPHQIASHSVTTFRNDCRSPTHLTVSSTNTLRSMPALHRAPVFHPP IHHSLERKEGSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDSQANFKSSSEQ SLTEMWRPNNNLSKEKTEWHVEKSSGKLQAAMASVIVRPSSSTKTDSMPAMQLASKDR VSERSSAGAHKTDCLKLAEAGETGRIILPNVNSDSVHTKSEKNFQAVSQGSVPSSVMS AVNTMCNTKTDVITSAADTTSVSSWGGSEVISSLSNTILASTSSECVSSKSVSQPVAQ KQECKVSTTAPVTLASSKTGSVVQPSSGFSGTTDFIHLKKHKAALAAAQYKSSNASET EPNAIKNQTLSASLPLDSTVICSTINKANSVGNGQASQTSQPNYHTKLKKAWLTRHSE EDKNTNKMENSGNSVSEIIKPCSVNLIASTSSDIQNSVDSKIIVDKYVKDDKVNRRKA KRTYESGSESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKRKGEIEEDLKPNGVLSR SAKERSKLKLQSNSNTGIPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCREC RLIRSKKGEEPAHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENF EDDELDIETSKYILDIIGDKFCQLVTSEKTALSWVKKDAKIAWKRAVRGVREMCDACE ATLFNIHWVCQKCGFVVCLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMPTQII PGSVLTDLLDAMHTLREKYGIKSHCHCTNKQNLQVGNFPTMNGVSQVLQNVLNHSNKI SLCMPESQQQNTPPKSEKNGGSSPESDVGTDNKLTPPESQSPLHWLADLAEQKAREEK KENKELTLENQIKEEREQDNSESPNGRTSPLVSQNNEQGSTLRDLLTTTAGKLRVGST DAGIAFAPVYSMGAPSSKSGRTMPNILDDIIASVVENKIPPSKTSKINVKPELKEEPE ESIISAVDENNKLYSDIPHSWICEKHILWLKDYKNSSNWKLFKECWKQGQPAVVSGVH KKMNISLWKAESISLDFGDHQADLLNCKDSIISNANVKEFWDGFEEVSKRQKNKSGET VVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFNLASHLPGFFVRPDLGP RLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDL DDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWY VNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLV ESFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMVRALKIHEDEVEDMEEN" BASE COUNT 2960 a 1693 c 1793 g 2288 t ORIGIN 1 cacaaggctg cgaatctggg agtccaaagg agtgtttgcg gggagggccc gaggtcgctg 61 tgtccggggc agagcggccg gttcgtcccg agtctgcgct ctttcgggtc cgctgctgtg 121 tcccggtccg ctctcctcag catgagcggc cggtaggagt gaggtttcat cggttccctc 181 gcactggagg aggcagcggc cgcttcggca gcgacagcta tggcggtaga gacgcgggca 241 gagctggtgg gtaagcggtt cctgtgtgtg gcggtcggcg acgaggcacg ttcggagcgc 301 tgggagagcg gacgcggctg gcgaagctgg cgagcggggg tcatccgagc cgtgtcacac 361 agggacagcc gcaatccgga cctggcgatg attcaaataa gtggaaatgg aaactcttca 421 ggtgtgtatg tggaatttga tgatcttgaa tgggataaac gagagtgggt taaagtttat 481 gaagattttt caactttctt ggtggaatac cacttaatct gggccaaaag gaatgaccct 541 agccagactc agggatcaaa gagcaaacag attcagtggc ctgcattgtt ctgggataca 601 tatgcggaac gtgccggttt gttacataga ctttcaaacc tctggttgaa agaaatatac 661 ccagttcagt cactgcagta gaattccttg tagataagca actggatttt ttaactgaag 721 atagtgcctt tcagccctac caggacgaca tagacagcct aaacccagtt ctcagggaca 781 acccgcagct tcatgaggaa gtgaaagtct gggtaaagga acaaaaggtt caggagattt 841 ttatgcaagg tccttattcc ttaaatggat acagagtgag agtatataga caagactctg 901 ccacccagtg gtttactggc ataattactc atcatgatct cttcacccgc accatgatcg 961 ttatgaatga tcaggtacta gaaccacaga atgtcgatcc ttctatggtt caaatgacct 1021 ttctagatga tgttgttcac tctttgttaa aaggtgaaaa tattggcatt acatcacgac 1081 gcaggtctcg tgccaatcaa aacgtcaacg ctgttcacag ccattataca cgtgcccaag 1141 caaatagtcc cagaccagca atgaactccc aagctgctgt accaaaacag aatacacacc 1201 agcaacagca acaaagaagt atccgtccaa ataagaggaa gggctcagat agcagtatac 1261 cagatgaaga gaagatgaag gaggaaaaat atgattatat atcacgagga gaaaatccta 1321 aaggtaaaaa caaacacttg atgaataaaa gaaggaaacc tgaggaggat gaaaagaaac 1381 taaatatgaa aagacttcga actgacaatg tttcagactt ttctgagagc agtgactcag 1441 aaaattcaaa taagagaata atagataatt cctcagaaca gaagccagag aatgaattga 1501 aaaataaaaa tacttcaaaa ataaatggag aagaaggaaa accccataat aatgagaagg 1561 caggagaaga gaccctaaaa aatagccagc ctccctggga tcaaatacag gaagataaaa 1621 aacatgaaga agcagagaag cggaagtctg ttgacactca gcttcaagaa gatatgatta 1681 ttcattcgtc agaacagtcc acagtttctg atcataattc taatgattta cttcctcagg 1741 aatgcaatat ggataaaaca cataccatgg aattgctacc aaaggagaag tttgtatcca 1801 gaccacccac accaaaatgt gttattgata ttacaaatga cactaattta gaaaaggtgg 1861 ctcaggaaaa ctcaagtacc tttggccttc agacacttca gaaaatggat cctaatgtta 1921 gtgattcaaa acactctatt gcaaatgcaa aattcttgga aacagcaaaa aaagattctg 1981 accagagctg ggtcagtgat gtagttaaag tggatctaac ccaatcaagt gttacaaatg 2041 cttcttcagg aaatgatcac ttgaacatgg aaaaagagaa gtatgtctct tacatttctc 2101 ctttaagtgc agtttctgtc atggaagata agctgcataa gcgaagtcca cctccagaga 2161 ctataaaatc taaacttaat acttcagtag atactcacaa gataaaatcc agcccatcac 2221 ctgaagttgt taaacccaaa ataactcatt ctcctgattc tgtaaagtct aaggccactt 2281 atgtgaacag ccaagctact ggtgaaagaa gattggcaaa taagatagaa catgagctat 2341 caagatgcag ttttcatcca attcctactc gaagcagtac attagaaact acaaagagtc 2401 ctcttatcat tgataaaaat gagcatttta cagtttacag agatcctgca cttattgggt 2461 cagaaacagg agctaatcat atttcacctt tcctaagcca gcatcctttt cctcttcact 2521 cctcatctca tagaacctgt ttaaatccag gtacccatca tcctgcctta actcctgcac 2581 cccatttact agccggatca tctagtcaaa ctccattacc taccattaac actcatcctc 2641 tgactagtgg tccacaccat gctgttcatc accctcattt acttcccact gtgttacctg 2701 gagtgcctac tgcctcctta cttggtggcc acccacgact agagagtgct catgccagca 2761 gcttgagcca cttagcgcta gcacaccagc aacaacaaca gttgttacag caccagtcac 2821 ctcatcttct tggacaagcc catccttctg cttcatataa tcagcttgga ctttatccaa 2881 ttatttggca gtatccaaat ggaacacatg catactcagg acttggtttg ccttcttcta 2941 agtgggttca cccagaaaat gcagttaatg ctgaagcttc attaaggagg aattctccca 3001 gtccttggct acatcagccc acccctgtga cctcagcaga tggtattgga ttacttagtc 3061 acattcctgt cagaccttcc agtgcagagc ctcatcggcc tcttaaaatt acagcccatt 3121 ccagtccacc attgacaaaa actttagtag atcatcataa ggaagaatta gaaagaaaag 3181 cttttatgga accattacgg tctgttgcat ccacatcagc caaaaatgac ctggatctaa 3241 ataggtcaca gactggaaaa gattgtcact tacataggca ttttgtggat ccagtattaa 3301 atcagttaca gaggccaccc caggagactg gagagaggtt aaacaaatac aaagaggaac 3361 accgtcgaat tcttcaagaa agtattgatg ttgctccctt tacaactaaa atcaagggac 3421 ttgagggtga gagagagaat tattccagag tggcatcatc atcttccagt cctaaaagcc 3481 atatcatcaa acaagatatg gatgtagaac gctcagtatc agatctttat aaaatgaagc 3541 actcagtgcc tcagagttta ccccaaagta actatttcac tacattgtct aatagtgtgg 3601 tcaatgaacc accaagatca tacccatcca aagaagtttc aaatatttac ggtgataaac 3661 agagtaatgc ccttgcagcg gcagcagcta atcctcaaac tctgacttca tttataacat 3721 ctctttcaaa gcctccacct ttgattaaac accaaccaga aagtgaaggt ttagtaggca 3781 agataccaga acatcttcca catcagattg catctcactc agtaacaacc ttcagaaatg 3841 attgtaggag tcctacccat ttgacagttt cttctacaaa tacactccgc agtatgcctg 3901 cattacatag agcaccagta tttcacccac caatccatca cagcctggaa agaaaggaag 3961 gcagctatag tagtctttcc cctccaactt taactccggt gatgccagta aatgctggtg 4021 gtaaagttca agaatcacag aagcctccaa ctctaatacc cgaaccaaaa gactcccagg 4081 caaattttaa gagttcttca gaacagagtt tgacggagat gtggagacct aataataacc 4141 tcagcaaaga gaaaactgaa tggcatgtgg agaaaagcag cggaaagtta caggctgcta 4201 tggcatctgt cattgtgcgt ccatcttcta gtacaaaaac tgatagtatg ccagcaatgc 4261 agttagcttc taaagatcga gttagtgaaa gatcttcagc tggggcacat aaaacagatt 4321 gcctcaaact agcagaagcc ggagaaactg gaagaatcat tttgccaaat gtgaattcag 4381 acagtgttca cacaaaatct gaaaaaaact ttcaggctgt ctcacagggc agtgttccca 4441 gttcagtcat gtctgctgta aatacgatgt gtaataccaa aacggatgta atcacatctg 4501 ctgccgatac taccagtgtt tccagctggg gtggttcaga agtaatttcc tctttatcaa 4561 ataccatttt ggcctctaca tcatcagaat gtgtatcttc aaaaagtgtc agtcagccag 4621 tggctcaaaa acaagaatgc aaggtcagca ccacagcacc agttacatta gccagtagta 4681 agacaggaag tgttgttcaa cccagttctg ggttctcagg cacaactgat tttatccatt 4741 taaaaaagca caaggcagca ttggctgcag ctcagtataa aagtagtaat gccagtgaga 4801 ctgaacctaa tgctataaaa aatcagacac tttcagcctc ccttcctctg gatagcactg 4861 taatctgtag tacaattaac aaagcaaact ctgtaggaaa tgggcaagct tcccagacaa 4921 gtcaaccaaa ctaccatact aaactgaaaa aggcctggct caccagacac tcagaagaag 4981 ataaaaatac taataaaatg gaaaattcag ggaattctgt atcagaaatt attaagccat 5041 gttctgtcaa cttaatagcc tctacatcta gtgatataca aaatagtgta gatagtaaga 5101 tcatagttga taaatatgta aaagatgata aagtcaacag gagaaaagcc aaaagaactt 5161 atgaatctgg ctctgaaagt ggagactcag atgaaagtga aagcaagtca gagcaaagga 5221 ctaaaagaca acctaagcca acttacaaaa agaagcaaaa tgatttgcaa aagagaaaag 5281 gtgaaataga agaagatttg aaacccaatg gagttctcag caggagtgcc aaagaaagaa 5341 gtaaactgaa gttgcaaagc aacagtaata ctggcattcc tcgttcagta ttgaaagatt 5401 ggcgtaaagt caagaagctg aagcaaactg gggaatcctt tttacaggat gactcctgct 5461 gtgagatagg gcctaattta caaaagtgtc gagaatgtag acttattcgc agtaaaaaag 5521 gagaagaacc agctcactca ccagtatttt gtagatttta ctactttaga cggttgtcat 5581 ttagtaaaaa cggagtagtt agaatagatg gtttctcttc tcctgaccaa tatgatgatg 5641 aagctatgag tttgtggaca catgaaaatt ttgaagatga tgaactagat atagagactt 5701 ctaaatatat cttggatata ataggtgata agttctgtca attagtaaca tctgaaaaaa 5761 cagctttgtc ctgggtgaaa aaggatgcca aaattgcctg gaaaagagca gtgagaggag 5821 tccgggagat gtgtgatgca tgtgaagcaa cattgtttaa cattcactgg gtctgccaaa 5881 aatgtggatt tgtggtctgc ttagattgtt acaaggcaaa ggaaaggaag agttctagag 5941 ataaagaact atatgcttgg atgaagtgtg tgaagggaca gcctcatgat cacaaacatt 6001 taatgccaac ccaaattata cctggttctg ttttgacaga tcttctagat gccatgcaca 6061 ctcttaggga aaaatatggt attaaatccc attgtcattg tactaacaaa cagaatttac 6121 aagttggaaa ttttcctaca atgaatggtg tatctcaagt tttacagaat gttcttaatc 6181 acagtaataa aatttctctg tgcatgcctg agtctcagca gcaaaatact cctccgaagt 6241 ctgagaaaaa tggtggcagc agcccagaga gtgatgtagg cacagataac aagttaactc 6301 ctccagaatc ccagtcacca ctgcactggt tagcagatct tgcagagcaa aaagccagag 6361 aggaaaaaaa agaaaacaaa gaacttaccc ttgaaaacca aattaaagaa gaaagagaac 6421 aagacaactc tgaatctcca aatggcagaa catcacctct tgtgtcccag aataatgaac 6481 aaggctcaac cttacgggat ttgctgacta caacagctgg aaagctacgt gtggggtcta 6541 cagatgctgg cattgccttt gccccagtat attcaatggg agccccaagt agcaaaagtg 6601 gacggactat gcctaacatt cttgatgaca taattgcttc agttgttgaa aacaaaattc 6661 caccaagtaa aacctccaag ataaatgtaa aaccagagct taaagaagag cctgaagaaa 6721 gcataatatc tgcagtggat gaaaataata aattatacag tgatatacca cattcttgga 6781 tctgtgagaa gcatatttta tggcttaagg attataagaa tagcagtaat tggaagcttt 6841 tcaaagaatg ttggaaacaa ggacagcctg cagtggtttc tggtgtgcat aagaaaatga 6901 acattagcct atggaaggcg gaatcaatta gtcttgattt tggagaccac caagctgatc 6961 tcctgaactg caaagatagc atcatttcaa atgccaatgt taaggaattc tgggatggtt 7021 ttgaagaagt ttcaaaacgg cagaaaaaca agagtggaga aacagttgtt ttaaaattga 7081 aagactggcc ttcaggagaa gacttcaaga ctatgatgcc agcaagatac gaagatcttt 7141 taaaaagtct gccattgcca gaatattgta atccagaagg aaaattcaat ttggcctctc 7201 atttgccagg attttttgta cgtcctgatc taggacccag gttgtgcagt gcctatggtg 7261 tagttgctgc taaagatcat gatataggaa caacaaatct ccatattgaa gtttctgatg 7321 ttgtaaatat actagtttat gttggcatag caaaaggaaa tggcattctc tcaaaagcag 7381 gaattctcaa gaaatttgag gaagaagatt tggatgacat tttaaggaaa agattgaagg 7441 actcaagtga aatacctggt gctctgtggc atatttatgc tgggaaagat gttgacaaga 7501 taagggaatt tcttcaaaag atttcaaaag aacaaggcct tgaagttcta ccagaacatg 7561 atccaatacg tgaccaaagt tggtatgtga acaaaaagct ccgtcaaagg ctgcttgaag 7621 aatatggagt cagaacctgt actcttattc agttccttgg tgatgctatt gttttgccag 7681 cgggagcact tcatcaggtt cagaattttc acagctgtat tcaggtaact gaagattttg 7741 tgtctccaga acatcttgta gagtcatttc atttaacaca ggaactgaga cttttgaagg 7801 aagaaatcaa ttatgatgat aaactacagg ttaaaaatat tttgtatcat gcagtcaaag 7861 aaatggtgag agccttgaag atacacgagg atgaagtaga ggatatggaa gaaaattaag 7921 tgtgatccag tttgatattt ttaggttgtt gaactgggat tacttaacct tgaatgatga 7981 tatgtatgca cactgacttt aagcttcata aaaccatcag tgccaagaaa ttctctttgt 8041 agtaattact tgttactgac accacagcag tatagcatat gtcacagctc ctgtgattca 8101 atgttataaa acaagcagaa ttttaaaagc agcactatat agctgttttg tattatagtg 8161 tatatgatgt ttgtgaaaat gccagattta aaatgatgta tttatttttg gtaaaaaata 8221 aaaaattcta tgctatattg ttgatcaagt gtaaatgtga ccttgtacag tttactaaaa 8281 ttactgatat ttttcactac attgagacag ttactgtgag aataggacac aaacaccagc 8341 tattgcctgc atctgggaaa ttgctgaatc gcacagcagt catgtcataa tcagaaaatt 8401 actgccaaat aattgtaaaa tttgtaaagt ataaagtata taaagtagat actaaataca 8461 gacacttcaa tattttgttg aagctattga ctgtacaatt aaacattttc aaaaggtgta 8521 atttatttaa aattgtctca ttttggtaaa atttatgtga acttttaaag ctaaatatta 8581 aacttaatat gctatgtaaa tatatacata tatacattta atgatgtatt tttttaaaac 8641 attggcttgc ttttgttaaa gtgcaagtgt tacatatggc tttgtacatt aaagttgaaa 8701 ggggttttac attttccatt aaaaggactt tatc //