LOCUS D89722 2439 bp mRNA linear HUM 20-FEB-1999 DEFINITION Homo sapiens bmal1a mRNA for BMAL1a, complete cds. ACCESSION D89722 VERSION D89722.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2439) AUTHORS Ikeda,M. TITLE Direct Submission JOURNAL Submitted (06-DEC-1996) to the DDBJ/EMBL/GenBank databases. Contact:Masaaki Ikeda Saitama Medical School, Department of Physiology; 38 Morohongo, Iruma-gun, Saitama 350-04, Japan REFERENCE 2 AUTHORS Ikeda,M. and Nomura,M. TITLE Molecular Cloning of a Novel Basic Helix-Loop-Helix/PAS Factor (BMAL1a) from the Human Brain JOURNAL Unpublished (1997) REFERENCE 3 AUTHORS Ikeda,M. and Nomura,M. TITLE cDNA cloning and tissue-specific expression of a novel basic helix-loop -helix/PAS protein (BMAL1) and identification of alternatively spliced variants with alternative translation initiation site usage JOURNAL Biochem. Biophys. Res. Commun. 233, 258-264 (1997) COMMENT Sequence updated (12-May-1997) FEATURES Location/Qualifiers source 1..2439 /db_xref="H-InvDB:HIT000102049" /db_xref="taxon:9606" /mol_type="mRNA" /organism="Homo sapiens" /sex="male" /tissue_type="brain" CDS 146..1897 /codon_start=1 /gene="bmal1a" /product="BMAL1a" /protein_id="BAA19968.1" /transl_table=1 /translation="MINIESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDK MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDD ELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAK VKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVE DKDFPSTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCLVAIGR LHSHVVPQPVNGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYF HQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIV STNTVVLANVLEGGDPTFPQLTASPHSMDSMLPSGEGGPKRTHPTVPGIPGGTRAGAG KIGRMIAEEIMEIHRIRGSSPSSCGSSPLNITSTPPPDASSPGGKKILNGGTPDIPSS GLLSGQAQENPGYPYSDSSSILGENPHIGIDMIDNDQGSSSPSNDEAAMAVIMSLLEA DAGLGGPVDFSDLPWPL" BASE COUNT 745 a 523 c 539 g 632 t ORIGIN 1 gccccaccga cctgctttcc agctctcttg gtaccagtgg tgtggattgc aaccgcaaac 61 ggaaaggcag ctccactgac taccattcac aggtcgaatt tggggagcac aatggctgga 121 ggtcagatgc ccactaggag atgctatgat taatatagaa agcatggaca cagacaaaga 181 tgaccctcat ggaaggttag aatatacaga acaccaagga aggataaaaa atgcaaggga 241 agctcacagt cagattgaaa agcggcgtcg ggataaaatg aacagtttta tagatgaatt 301 ggcttctttg gtaccaacat gcaacgcaat gtccaggaaa ttagataaac ttactgtgct 361 aaggatggct gttcagcaca tgaaaacatt aagaggtgcc accaatccat acacagaagc 421 aaactacaaa ccaacttttc tatcagacga tgaattgaaa cacctcattc tcagggcagc 481 agatggattt ttgtttgtcg taggatgtga ccgagggaag atactctttg tctcagagtc 541 tgtcttcaag atcctcaact acagccagaa tgatctgatt ggtcagagtt tgtttgacta 601 cctgcatcct aaagatattg ccaaagtcaa ggagcagctc tcctcctctg acaccgcacc 661 ccgggagcgg ctcatagatg caaaaactgg acttccagtt aaaacagata taacccctgg 721 gccatctcga ttatgttctg gagcacgacg ttctttcttc tgtaggatga agtgtaacag 781 gccttcagta aaggttgaag acaaggactt cccctctacc tgctcaaaga aaaaagcaga 841 tcgaaaaagc ttctgcacaa tccacagcac aggctatttg aaaagctggc cacccacaaa 901 gatggggctg gatgaagaca acgaaccaga caatgagggg tgtaacctca gctgcctcgt 961 cgcaattgga cgactgcatt ctcatgtagt tccacaacca gtgaacgggg aaatcagggt 1021 gaaatctatg gaatatgttt ctcggcacgc gatagatggc aagtttgttt ttgtagacca 1081 gagggcaaca gctattttgg catatttacc acaagaactt ctaggcacat cgtgttatga 1141 atattttcac caagatgaca taggacatct tgcagaatgt cataggcaag ttttacagac 1201 gagagaaaaa attacaacta attgctataa atttaaaatc aaagatggtt cttttatcac 1261 actacggagt cgatggttca gtttcatgaa cccttggacc aaggaagtag aatatattgt 1321 ctcaactaac actgttgttt tagccaacgt cctggaaggc ggggacccaa ccttcccaca 1381 gctcacagca tccccccaca gcatggacag catgctgccc tctggagaag gtggcccaaa 1441 gaggacccac cccactgttc cagggattcc agggggaacc cgggctgggg caggaaaaat 1501 aggccgaatg attgctgagg aaatcatgga aatccacagg ataagagggt catcgccttc 1561 tagctgtggc tccagcccat tgaacatcac gagtacgcct ccccctgatg cctcttctcc 1621 aggaggcaag aagattttaa atggagggac tccagacatt ccttccagtg gcctactatc 1681 aggccaggct caggagaacc caggttatcc atattctgat agttcttcta ttcttggtga 1741 gaacccccac ataggtatag acatgattga caacgaccaa ggatcaagta gtcccagtaa 1801 tgatgaggca gcaatggctg tcatcatgag cctcttggaa gcagatgctg gactgggtgg 1861 ccctgttgac tttagtgact tgccatggcc gctgtaaaca ctacatgttg ctttggcaac 1921 agctatagta tcaaagtgca ttactggtgg agttttacag tctgtgaagc ttactggata 1981 aggagagaat agcttttatg tactgacttc ataaaagcca tctcagagcc attgatacaa 2041 gtcaatctta ctatatgtaa cttcagacaa agtggaacta agcctgctcc agtgtttcct 2101 catcattgat tattgggcca gctgtggata gcttgcatta attgtatatt ttggattctg 2161 tttgtgttga attttttaat cattgtgcac agaagcatca ttggtagctt ttatatgcaa 2221 atggtcattt cagatgtatg gtgtttttac actacaaaga agtcccccat gtggatattt 2281 cttatactaa ttgtatcata aagccgttta ttcttccttg taagaatcct ttactataaa 2341 tatgggttaa agtataatgt actagacagt taaatatttt taataaatgt ttcccttgtt 2401 ctattaaaaa aaaaaaaaaa aaaaaaaaaa aaaaacggc //