LOCUS HUMA1XIXC 3720 bp mRNA linear HUM 07-FEB-2003
DEFINITION Homo sapiens mRNA for a1(XIX) collagen chain, complete cds.
ACCESSION D38163
VERSION D38163.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3720)
AUTHORS Yoshioka,H.
TITLE Direct Submission
JOURNAL Submitted (05-SEP-1994) to the DDBJ/EMBL/GenBank databases.
Contact:Hidekatsu Yoshioka
Okayama University Medical School, Molecular Biology and
Biochemisty; 2-5-1 Shikata-cho, Okayama, Okayama 700, Japan
REFERENCE 2
AUTHORS Inoguchi,K., Yoshioka,H., Khaleduzzaman,M. and Ninomiya,Y.
TITLE The mRNA for alpha 1(XIX) collagen chain, a new member of FACITs,
contains a long unusual 3' untranslated region and display many
unique splicing variants
JOURNAL J. Biochem. 117, 137-146 (1995)
COMMENT
FEATURES Location/Qualifiers
source 1..3720
/cell_line="RD (CCL 136 human embryonal rhabdomyosarcoma)"
/db_xref="H-InvDB:HIT000101421"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="clones KI[6, 18, 50 and 51]"
/organism="Homo sapiens"
5'UTR 1..117
CDS 118..3546
/codon_start=1
/product="a1(XIX) collagen chain precursor"
/protein_id="BAA07368.1"
/translation="MRLTGPWKLWLWMSIFLLPASTSVTVRDKTEESCPILRIEGHQL
TYDNINKLEVSGFDLGDSFSLRRAFCESDKTCFKLGSALLIRDTIKIFPKGLPEEYSV
AAMFRVRRNAKKERWFLWQVLNQQNIPQISIVVDGGKKVVEFMFQATEGDVLNYIFRN
RELRPLFDRQWHKLGISIQSQVISLYMDCNLIARRQTDEKDTVDFHGRTVIATRASDG
KPVDIELHQLKIYCSANLIAQETCCEISDTKCPEQDGFGNIASSWVTAHASKMSSYLP
AKLELKDQCQCIPNKGEAGLPGAPGSPGQKGHKGEPGENGLHGAPGFPGQKGEQGFEG
SKGETGEKGEQGEKGDPALAGLNGENGLKGVLGPHGPPGPKGEKGDTGPPGPPALPGS
LGIQGPQGPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQGIHQTLGGDDNKDNKGND
EHEAGGLKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGE
PGDPGPPGLIGSPGLKGQQGSAGSMGPRGPPGDVGLPGEHGIPGKQGIKGEKGDPGGI
IGPPGLPGPKGEAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQG
IGIPGRTGAQGPAGEPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIAL
PLLGDIGALLKNFCGNCQASVPGLKSNKGEEGGAGEPGKYDSMARKGDIGPRGPPGIP
GREGPKGSKGERGYPGIPGEKGDEGLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKG
EKGSDGPPGKPGPPGPPGIPFNERNGMSSLYKIKGGVNVPSYPGPPGPPGPKGDPGPV
GEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGMSGKPGAPGPPGVPGEPGERGPVGDIG
FPGPEGPSGKPGINGKDGIPGAEGIMGKPGDRGPKGERGDQGIPGDRGSQGERGKPGL
TGMKGAIGPMGPPGNKGSMGSPGHQGPPGSPGIPGIPADAVSFEEIKKYINQEVLRIF
EERMAVFLSQLKLPAAMLAAQAYGRPGPPGKDGLPGPPGDPGPQGYRGQKGERGEPGI
GLPGSPGLPGTSALGLPGSPGAPGPQGPPGPSGRCNPEDCLYPVSHAHQRTGGN"
sig_peptide 118..186
mat_peptide 187..3543
/product="a1(XIX) collagen chain"
3'UTR 3547..3720
BASE COUNT 1052 a 843 c 1078 g 747 t
ORIGIN
1 actcgcaggg agctcactcc tcggcggtgc cgcagccctg tccggactcc actgcgcctc
61 tgaggggctc aaatacgaat tcaagatccg tggccgttca catggtttca aggcacaatg
121 agactcactg gcccttggaa actttggctt tggatgtcaa tatttctgct tcctgcttcc
181 acttccgtga ccgttaggga caagacagaa gagtcatgcc ctatcctgag aatagaggga
241 catcagctga catatgacaa cataaacaaa cttgaagttt caggttttga tctaggagac
301 agcttttctc taagacgtgc attttgtgaa agtgataaaa cctgtttcaa attgggaagt
361 gcacttctta ttagagacac tattaagata tttcccaaag gccttcctga ggagtactca
421 gtagctgcca tgtttcgagt acgaagaaac gccaaaaagg aacggtggtt tctgtggcag
481 gttttaaacc agcagaatat tccacagatt tctatagtag ttgatggtgg aaagaaggtg
541 gtggaattta tgtttcaagc cacagaggga gatgtgttga actacatttt tagaaatcga
601 gaactccgtc ctttgtttga tcgtcagtgg cacaaacttg gcattagtat acaatcccag
661 gtcatttcac tttatatgga ttgtaattta attgcgagga ggcagactga tgaaaaggac
721 actgtggatt tccatggacg gacagttatt gctacgcgag cttcagatgg caagcctgtg
781 gatattgaac ttcaccaact taaaatctac tgcagtgcaa acctcatagc tcaagaaaca
841 tgttgtgaaa tatcagatac taagtgccca gagcaggatg gctttggaaa tattgcatca
901 tcatgggtaa ctgctcatgc cagtaaaatg tcttcatatc tgccagcaaa gctggaactt
961 aaagaccagt gccagtgcat tccaaacaag ggagaagcag gattaccagg agctccgggt
1021 tcacctgggc agaaagggca taaaggagag ccgggtgaaa atggtttaca tggtgctcca
1081 ggattccctg gtcaaaaggg agagcaaggt tttgaaggca gcaaaggaga aactggtgaa
1141 aagggtgaac aaggagaaaa aggagatcca gctctggctg gccttaatgg agaaaatggt
1201 ttgaaaggtg tcttgggtcc tcatggtcca cctggcccaa aaggagaaaa gggagataca
1261 ggacccccag gaccaccagc cttacctggt tccctgggga tacaaggccc ccaaggtcca
1321 cctggaaaag agggtcagag gggaagacga gggaaaacag gacctcccgg aaaaccagga
1381 cccccaggac cacctggacc tcctggaata caaggaatac accaaactct tggtggagat
1441 gataacaagg ataacaaggg aaatgatgaa catgaagctg gaggcctgaa aggagacaag
1501 ggtgaaactg gactaccagg atttccaggg tctgttggcc ctaaaggaca aaaaggagaa
1561 cctggagagc cttttacaaa aggagaaaaa ggagatagag gagaacctgg ggtaatagga
1621 tcacagggag taaagggtga acctggagat cccggacccc ctggtttaat aggaagccca
1681 ggactaaagg gtcagcaagg atctgcaggc tccatgggac ccagaggacc gccaggagat
1741 gttggattgc caggagaaca tggtatccca ggaaaacaag gcattaaagg agaaaaggga
1801 gatccaggtg ggatcatagg ccctcccggg cttccaggtc caaaaggtga ggctggtcct
1861 ccagggaaaa gcctgccagg ggaaccagga ttagatggaa atcctggagc acctggtcca
1921 cgtgggccaa agggtgaaag aggacttcca ggtgttcacg gttccccagg ggacataggc
1981 ccacaaggga taggaattcc tggcagaaca ggcgcccaag gaccagctgg agagccaggt
2041 attcagggtc ctcgaggtct ccctgggttg ccaggaactc cagggactcc agggaatgat
2101 ggagttccag ggagagatgg aaagccaggc ctgccaggcc ccccaggtga cccgattgca
2161 cttcctctct tgggagacat cggtgctttg ctcaagaatt tctgtggcaa ctgccaagcc
2221 agtgtcccag ggctgaaaag caacaaagga gaagaaggag gtgctggtga gcctggaaag
2281 tatgattcca tggcccggaa gggtgatata gggccacggg gtcctccagg aatcccagga
2341 agagagggac caaagggaag caaaggagag cggggctacc ctgggatacc tggggagaaa
2401 ggtgatgagg gtcttcaagg aattccaggc attccaggtg ctccaggccc gactggaccc
2461 cctggcttaa tgggaagaac tggacatcct ggtcccacag gagcaaaagg tgaaaagggc
2521 agcgacggac cccctgggaa acccggacca cctggaccac ctggtattcc atttaatgaa
2581 cgaaacggca tgagcagttt atataaaatt aagggaggtg tgaatgttcc cagttaccca
2641 gggccacccg gtcctcctgg cccaaaaggc gatcctggcc cagtgggaga gcctggtgca
2701 atggggttgc caggattaga aggatttcca ggtgtaaagg gagatcgagg cccagcaggt
2761 cccccaggaa tagcagggat gtcgggaaaa cctggtgccc cagggcctcc aggagttcca
2821 ggggaaccgg gtgagagagg acctgttgga gatataggtt tccctggacc agaaggaccc
2881 tcaggaaagc caggaataaa tggaaaagat ggaataccag gtgctgaggg catcatgggt
2941 aagcctggag acagaggccc caaaggagaa cgtggtgatc aggggattcc aggagacaga
3001 ggctcacaag gtgaacgggg aaaaccaggc cttacaggca tgaagggggc catcggtcct
3061 atgggtccac caggaaacaa gggctccatg ggatcccctg gccaccaagg ccctccaggc
3121 tctccaggca tccctggcat tccggctgat gcagtttcat ttgaagaaat aaagaagtat
3181 attaatcaag aggtcctaag gatttttgaa gagaggatgg ctgtattcct atcccagctc
3241 aagctgccag cagcaatgtt ggctgcccaa gcttatggga gacctgggcc accagggaag
3301 gatgggttgc ctgggccacc aggagaccct ggaccccaag gctacagagg acagaaggga
3361 gaaagaggtg aacctggaat tgggctgcca gggagtccag gtcttcctgg gacttcagct
3421 ctgggtttgc caggctcacc aggtgcccca ggcccccagg gccccccagg acccagtgga
3481 agatgtaacc cagaagattg cctctatcct gtgtctcatg cccatcagcg cacaggtggg
3541 aattgaacac acctgaagaa gacttagttc ctggtaacat ttccttggac atggagctct
3601 cttaataccg tcaaaccctc atcatctgtg ggttgctttt tttttttttt tttttttggg
3661 gagtaagcca ggcattaaaa gcaaccgttt gaatcctatt cctgtgacaa ttgcaaatca
//