LOCUS HUMVLDLRA 3308 bp mRNA linear HUM 01-OCT-2002 DEFINITION Homo sapiens mRNA for very low density lipoprotein receptor, complete cds. ACCESSION D16493 VERSION D16493.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3308) AUTHORS Sakai,J. TITLE Direct Submission JOURNAL Submitted (19-JUN-1993) to the DDBJ/EMBL/GenBank databases. Contact:Juro Sakai Tohoku University Gene Research Center; 1-1 Tsutsumidori-Amamiya, Aoba, Sendai, Miyagi 981, Japan REFERENCE 2 AUTHORS Sakai,J., Hoshino,A., Takahashi,S., Miura,Y., Ishii,H., Suzuki,H., Kawarabayasi,Y. and Yamamoto,T. TITLE Structure,chromosome location, and expression of the human very low density lipoprotein receptor gene JOURNAL J. Biol. Chem. 269, 2173-2182 (1994) COMMENT FEATURES Location/Qualifiers source 1..3308 /cell_line="THP-1" /cell_type="monocytic leukemia" /clone="p101, p102 and phVLR1" /db_xref="H-InvDB:HIT000100600" /db_xref="taxon:9606" /mol_type="mRNA" /organism="Homo sapiens" CDS 71..2692 /codon_start=1 /note="homologus to the low density lipoprotein receptor" /product="very low density lipoprotein receptor" /protein_id="BAA03945.1" /translation="MGTSALWALWLLLALCWAPRESGATGTGRKAKCEPSQFQCTNGR CITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNNGQCVPSRWKCDGDPDCEDGSD ESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGNITCSPDEFT CSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWVCDDDADC SDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSR TCRPDQFECEDGSCIHGSRQCNGIRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDI SKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSHICKDLVIGYECDCAAGFELIDRK TCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLATGVCKAVGKEPSLIFTNRRD IRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWADLSQKAIFSASIDDKVGRHVKM IDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKRKFLFNSDLREPASIAVDPL SGFVYWSDWGEPAKIEKAGMNGFDRRPLVTADIQWPNGITLDLIKSRLYWLDSKLHML SSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKFTGSELATLV NNLNDAQDIIVYHELVQPSGKNWCEEDMENGGCEYLCLPAPQINDHSPKYTCSCPSGY NVEENGRDCQSTATTVTYSETKDTNTTEISATSGLVPGGINVTTAVSEVSVPPKGTSA AWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASV GHTYPAISVVSTDDDLA" sig_peptide 71..151 mat_peptide 152..2689 /note="homologus to the low density lipoprotein receptor, mature peptide" /product="very low density lipoprotein receptor, mature peptide" mat_peptide 152..1135 /product="ligand binding domain composed of eight cystein-rich repeats homologusto complement factor C9" mat_peptide 1136..2320 /product="EGF precursor homology domain with three growth factor repeat" mat_peptide 2321..2407 /product="O-linked sugars domain" variation 2322..2405 /note="this region is lacking in the variant form receptor" /replace="" mat_peptide 2462..2527 /product="transmembrane domain" mat_peptide 2528..2689 /product="cytoplasmic domain with FDNPVY sequence" mat_peptide 2564..2581 /product="FDNPVY sequence" regulatory 3285..3290 /regulatory_class="polyA_signal_sequence" BASE COUNT 941 a 708 c 824 g 835 t ORIGIN 1 tttcggaagg gctggtaact tgttgtgcgg agcgaacggc ggcggcggcg gcaccatcca 61 ggcgggcacc atgggcacgt ccgcgctctg ggcgctctgg ctgctgctcg cgctgtgctg 121 ggcgccccgg gagagcggcg ccaccggaac cgggagaaaa gccaaatgtg aaccctccca 181 attccagtgc acaaatggtc gctgtattac gctgttgtgg aaatgtgatg gggatgaaga 241 ctgtgttgac ggcagtgatg aaaagaactg tgtaaagaag acgtgtgctg aatctgactt 301 cgtgtgcaac aatggccagt gtgttcccag ccgatggaag tgtgatggag atcctgactg 361 cgaagatggt tcagatgaaa gcccagaaca gtgccatatg agaacatgcc gcatacatga 421 aatcagctgt ggcgcccatt ctactcagtg tatcccagtg tcctggagat gtgatggtga 481 aaatgattgt gacagtggag aagatgaaga aaactgtggc aatataacat gtagtcccga 541 cgagttcacc tgctccagtg gccgctgcat ctccaggaac tttgtatgca atggccagga 601 tgactgcagc gatggcagtg atgagctgga ctgtgccccg ccaacctgtg gcgcccatga 661 gttccagtgc agcacctcct cctgcatccc catcagctgg gtatgcgacg atgatgcaga 721 ctgctccgac caatctgatg agtccctgga gcagtgtggc cgtcagccag tcatacacac 781 caagtgtcca gccagcgaaa tccagtgcgg ctctggcgag tgcatccata agaagtggcg 841 atgtgatggg gaccctgact gcaaggatgg cagtgatgag gtcaactgtc cctctcgaac 901 ttgccgacct gaccaatttg aatgtgagga tggcagctgc atccatggca gcaggcagtg 961 taatggtatc cgagactgtg tcgatggttc cgatgaagtc aactgcaaaa atgtcaatca 1021 gtgcttgggc cctggaaaat tcaagtgcag aagtggagaa tgcatagata tcagcaaagt 1081 atgtaaccag gagcaggact gcagggactg gagtgatgag cccctgaaag agtgtcatat 1141 aaacgaatgc ttggtaaata atggtggatg ttctcatatc tgcaaagacc tagttatagg 1201 ctacgagtgt gactgtgcag ctgggtttga actgatagat aggaaaacct gtggagatat 1261 tgatgaatgc caaaatccag gaatctgcag tcaaatttgt atcaacttaa aaggcggtta 1321 caagtgtgaa tgtagtcgtg gctatcaaat ggatcttgct actggcgtgt gcaaggcagt 1381 aggcaaagag ccaagtctga tcttcactaa tcgaagagac atcaggaaga ttggcttaga 1441 gaggaaagaa tatatccaac tagttgaaca gctaagaaac actgtggctc tcgatgctga 1501 cattgctgcc cagaaactat tctgggccga tctaagccaa aaggctatct tcagtgcctc 1561 aattgatgac aaggttggta gacatgttaa aatgatcgac aatgtctata atcctgcagc 1621 cattgctgtt gattgggtgt acaagaccat ctactggact gatgcggctt ctaagactat 1681 ttcagtagct accctagatg gaaccaagag gaagttcctg tttaactctg acttgcgaga 1741 gcctgcctcc atagctgtgg acccactgtc tggctttgtt tactggtcag actggggtga 1801 accagctaaa atagaaaaag caggaatgaa tggattcgat agacgtccac tggtgacagc 1861 ggatatccag tggcctaacg gaattacact tgaccttata aaaagtcgcc tctattggct 1921 tgattctaag ttgcacatgt tatccagcgt ggacttgaat ggccaagatc gtaggatagt 1981 actaaagtct ctggagttcc tagctcatcc tcttgcacta acaatatttg aggatcgtgt 2041 ctactggata gatggggaaa atgaagcagt ctatggtgcc aataaattca ctggatcaga 2101 gctagccact ctagtcaaca acctgaatga tgcccaagac atcattgtct atcatgaact 2161 tgtacagcca tcaggtaaaa attggtgtga agaagacatg gagaatggag gatgtgaata 2221 cctatgcctg ccagcaccac agattaatga tcactctcca aaatatacct gttcctgtcc 2281 cagtgggtac aatgtagagg aaaatggccg agactgtcaa agtactgcaa ctactgtgac 2341 ttacagtgag acaaaagata cgaacacaac agaaatttca gcaactagtg gactagttcc 2401 tggagggatc aatgtgacca cagcagtatc agaggtcagt gttcccccaa aagggacttc 2461 tgccgcatgg gccattcttc ctctcttgct cttagtgatg gcagcagtag gtggctactt 2521 gatgtggcgg aattggcaac acaagaacat gaaaagcatg aactttgaca atcctgtgta 2581 cttgaaaacc actgaagagg acctctccat agacattggt agacacagtg cttctgttgg 2641 acacacgtac ccagcaatat cagttgtaag cacagatgat gatctagctt gacttctgtg 2701 acaaatgttg acctttgagg tctaaacaaa taataccccc gtcggaatgg aaccgagcca 2761 gcagctgaag tctctttttc ttcctctcgg ctggaagaac atcaagatac ctttgcgtgg 2821 atcaagcttg tgtacttgac cgtttttata ttacttttgt aaatattctt gtccacattc 2881 tacttcagct ttggatgtgg ttaccgagta tctgtaaccc ttgaatttct agacagtatt 2941 gccacctctg gccaaatatg cactttccct agaaagccat attccagcag tgaaacttgt 3001 gctatagtgt ataccacctg tacatacatt gtataggcca tctgtaaata tcccagagaa 3061 caatcactat tcttaagcac tttgaaaata tttctatgta aattattgta aactttttca 3121 atggttggga caatggcaat aggacaaaac gggttactaa gatgaaattg ccaaaaaaat 3181 ttataaacta attttgtacg tatgaatgat atctttgacc tcaatggagg tttgcaaaga 3241 ctgagtgttc aaactactgt acattttttt tcaagtgcta aaaaattaaa ccaagcagct 3301 taaccatg //