LOCUS HUMCOLVIIB 3240 bp mRNA linear HUM 14-FEB-2003
DEFINITION Homo sapiens Col VII mRNA for type VII collagen, partial cds.
ACCESSION D13694 D11152
VERSION D13694.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3240)
AUTHORS Tanaka,T.
TITLE Direct Submission
JOURNAL Submitted (16-NOV-1992) to the DDBJ/EMBL/GenBank databases.
Contact:Toshihiro Tanaka
Kyoto University, Faculty of Medicine, Department of Dermatology;
kawaramati 54, Kyoto, Kyoto 606, Japan
REFERENCE 2
AUTHORS Tanaka,T., Takahashi,K., Furukawa,F. and Imamura,S.
TITLE Molecular cloning and characterization of type VII collagen cDNA
JOURNAL Biochem. Biophys. Res. Commun. 183, 958-963 (1992)
REFERENCE 3
AUTHORS Tanaka,T., Furukawa,F. and Imamura,S.
TITLE Epitope mapping for epidermolysis bullosa acquisita autoantibody
by molecularly cloned cDNA for type VII collagen.
JOURNAL J. Invest. Dermatol. 102, 706-709 (1994)
COMMENT D11152:Submitted (15-May-1992) to by:
Toshihiro Tanaka
FEATURES Location/Qualifiers
source 1..3240
/cell_type="keratinocyte"
/db_xref="H-InvDB:HIT000100510"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="clones 2, 221, R1, 113 and 123"
/organism="Homo sapiens"
/tissue_type="skin"
CDS <1..>3240
/codon_start=1
/gene="Col VII"
/product="type VII collagen"
/protein_id="BAA02853.1"
/translation="EFRVNDFSILRTLLPLVSRRVCTTAGGVPVTRPPDDSTSAPRDL
VLSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQHCRVSGRQVNVPAGETSVRLRG
LRPLTEYQVTVIALYANSIGEAVSGTARTTALEGPELTIQNTTAHSLLVAWRSVPGAT
GYRVTWRVLSGGPTQQQELGPGQGSVLLRDLEPGTDYEVTVSTLFGRSVGPATSLMAR
TDASVEQTLRPVILGPTSILLSWNLVPEARGYRLEWRRETGLEPPQKVVLPSDVTRYQ
LDGLQRALSTASHSTLCWRATRWHPCNRGSHWTRAACEPCNRPASHRAARAGVRVSWC
PVPGATQYRIICADTQGVERTLVLPGSQTAFDLDDVQAGLSYTVRVSARVGPREGSAS
VLTVRREPETPLAVPGLRVVVSDATRVRVAWGPVPGASGFRISWSTGSGPESSQTLPP
DSTATDITGLQPGTTYQVAVSVLRGREEGPAAVIVARTDPLGPVRTVHVTQASSSSVT
ITWTRVPGATGYRVSWHSAHGPEKSQLVSGEATVAELDGLEPDTEYTVHVRAHVAGVD
GPPASVVVRTAPEPVGRVSRLQILNASSDVLRITWVGVTGATAYRLAWGRSEGGPMRH
QILPGNTDSAEIRGLEGGVSYSVRVTALVGDHEGTPVSIVVTTPPEAPPALGTLHVVQ
RGEHSLRLRWEPVPREQGFLLHWQPEGGQEQSRVLGPELSSYHLDGLEPATQYRVRLS
VLGPAGEGPSAEVTARTESPRVPSIELRVVDTSIDSVTLAWTPVSRASSYILSWRPLR
GPGQEVPGSPQTLPGISSSQRVTGLEPGVSYIFSLTPVLDGVRGPEASVTQTPVCPRG
LADVVFLPHATQDNAHRAEATRRVLERLVLALGPLGPQAVQVGLLSYSHRPSPLFPLN
GSHDLGIILQRILDMPYMDPSGNNLGTAVVTAHRYMLAPDAPGRRQHVPGVMVLLVDE
PLRGDIFSPIREAQASGLNVVMLGMAGADPEQLRRLAPGMDSVQTFFAVDDGPSLDQA
VSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPG"
misc_feature 435..1438
/citation=[2]
/note="The region was deposited under accession no.
D11152 on May 15, 1992."
/note="about one-fourth of the non-collagenous domain"
BASE COUNT 581 a 975 c 1053 g 631 t
ORIGIN
1 gaattccgcg tcaatgactt cagcatcttg aggacactac tgcccctcgt ttcccggaga
61 gtgtgcacga ctgctggtgg cgtgcctgtg acccgacctc cggatgactc gacctctgct
121 ccacgagacc tggtgctgtc tgagccaagc agccaatcct tgagagtaca gtggacagcg
181 gccagtggcc ctgtgactgg ctacaaggtc cagtacactc ctctgacggg gctgggacag
241 cactgccgag tgagcggcag gcaggtgaac gtcccagctg gtgagaccag tgtgcggctg
301 cggggtctcc ggccactgac cgagtaccaa gtgactgtga ttgccctcta cgccaacagc
361 atcggggagg ctgtgagcgg gacagctcgg accactgccc tagaagggcc ggaactgacc
421 atccagaata ccacagccca cagcctcctg gtggcctggc ggagtgtgcc aggtgccact
481 ggctaccgtg tgacatggcg ggtcctcagt ggtgggccca cacagcagca ggagctgggc
541 cctgggcagg gttcagtgtt gctgcgtgac ttggagcctg gcacggacta tgaggtgacc
601 gtgagcaccc tatttggccg cagtgtgggg cccgccactt ccctgatggc tcgcactgac
661 gcttctgttg agcagaccct gcgcccggtc atcctgggcc ccacatccat cctcctttcc
721 tggaacttgg tgcctgaggc ccgtggctac cggttggaat ggcggcgtga gactggcttg
781 gagccaccgc agaaggtggt actgccctct gatgtgaccc gctaccagtt ggatgggctg
841 cagcgggcac tgagtaccgc ctcacactct acactctgct ggagggccac gaggtggcac
901 ccctgcaacc gtggttccca ctggaccaga gctgcctgtg agccctgtaa cagacctgca
961 agccaccgag ctgcccgggc aggggtgcga gtgtcctggt gcccagtccc tggtgccacc
1021 cagtaccgca tcatttgcgc agacacccag ggggttgagc ggaccctggt gcttcctggg
1081 agtcagacag cattcgactt ggatgacgtt caggctgggc ttagctacac tgtgcgggtg
1141 tctgctcgag tgggtccccg tgagggcagt gccagtgtcc tcactgtccg ccgggagccg
1201 gaaactccac ttgctgttcc agggctgcgg gttgtggtgt cagatgcaac gcgagtgagg
1261 gtggcctggg gacccgtccc tggagccagt ggatttcgga ttagctggag cacaggcagt
1321 ggtccggagt ccagccagac actgccccca gactctactg ccacagacat cacagggctg
1381 cagcctggaa ccacctacca ggtggctgtg tcggtactgc gaggcagaga ggagggccct
1441 gctgcagtca tcgtggctcg aacggaccca ctgggcccag tgaggacggt ccatgtgact
1501 caggccagca gctcatctgt caccattacc tggaccaggg ttcctggcgc cacaggatac
1561 agggtttcct ggcactcagc ccacggccca gagaaatccc agttggtttc tggggaggcc
1621 acggtggctg agctggatgg actggagcca gatactgagt atacggtgca tgtgagggcc
1681 catgtggctg gcgtggatgg gccccctgcc tctgtggttg tgaggactgc ccctgagcct
1741 gtgggtcgtg tgtcgaggct gcagatcctc aatgcttcca gcgacgttct acggatcacc
1801 tgggtagggg tcactggagc cacagcttac agactggcct ggggccggag tgaaggcggc
1861 cccatgaggc accagatact cccaggaaac acagactctg cagagatccg gggtctcgaa
1921 ggtggagtca gctactcagt gcgagtgact gcacttgtcg gggaccacga gggcacacct
1981 gtctccattg ttgtcactac gccgcctgag gctccgccag ccctggggac gctgcacgtg
2041 gtgcagcgcg gggagcactc gctgaggctg cgctgggagc cggtgcccag agagcagggc
2101 ttccttctgc actggcaacc tgagggtggc caggaacagt cccgggtcct ggggcccgag
2161 ctcagcagct atcacctgga cgggctggag ccagcgacac agtaccgcgt gaggctgagt
2221 gtcctagggc cagctggaga agggccctct gcagaggtga ctgcgcgcac tgagtcacct
2281 cgtgttccaa gcattgaact acgtgtggtg gacacctcga tcgactcggt gactttggcc
2341 tggactccag tgtccagggc atccagctac atcctatcct ggcggccact cagaggccct
2401 ggccaggaag tgcctgggtc cccgcagaca cttccaggga tctcaagctc ccagcgggtg
2461 acagggctag agcctggcgt ctcttacatc ttctccctga cgcctgtcct ggatggtgtg
2521 cggggtcctg aggcatctgt cacacagacg ccagtgtgcc cccgtggcct ggcggatgtg
2581 gtgttcctac cacatgccac tcaagacaat gctcaccgtg cggaggctac gaggagggtc
2641 ctggagcgtc tggtgttggc acttgggcct cttgggccac aggcagttca ggttggcctg
2701 ctgtcttaca gtcatcggcc ctccccactg ttcccactga atggctccca tgaccttggc
2761 attatcttgc aaaggatcct tgacatgccc tacatggacc caagtgggaa caacctgggc
2821 acagccgtgg tcacagctca cagatacatg ttggcaccag atgctcctgg gcgccgccag
2881 cacgtaccag gggtgatggt tctgctagtg gacgaaccct tgagaggtga catattcagc
2941 cccatccgtg aggcccaggc ttctgggctt aatgtggtga tgttgggaat ggctggagcg
3001 gacccagagc agctgcgtcg cttggcgccg ggtatggact ctgtccagac cttcttcgcc
3061 gtggatgatg ggccaagcct ggaccaggca gtcagtggtc tggccacagc cctgtgtcag
3121 gcatccttca ctactcagcc ccggccagag ccctgcccag tgtattgtcc aaagggccag
3181 aagggggaac ctggagagat gggcctgaga ggacaagttg ggcctcctgg cgaccctggc
//