LOCUS CR749820 5140 bp mRNA linear HTC 07-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp781D1854 (from clone DKFZp781D1854).
ACCESSION CR749820
VERSION CR749820.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5140)
AUTHORS Koehrer K., Beyer A., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (22-SEP-2004) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by BMFZ (Biomedical Research Center at the
Heinrich-Heine-University, Duesseldorf/Germany) within the cDNA
sequencing consortium of the German Genome Project.
This clone (DKFZp781D1854) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp781D1854
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..5140
/db_xref="H-InvDB:HIT000306750"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="781 (synonym: hlcc4). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp781D1854"
/tissue_type="retina"
/note="channel-associated protein of synapse
(chapsyn-110), differentially spliced, N-terminus
elongated"
/db_xref="taxon:9606"
CDS 313..3240
/codon_start=1
/gene="DKFZp781D1854"
/product="hypothetical protein"
/db_xref="GOA:Q15700"
/db_xref="H-InvDB:HIT000306750.14"
/db_xref="HGNC:HGNC:2901"
/db_xref="InterPro:IPR001452"
/db_xref="InterPro:IPR001478"
/db_xref="InterPro:IPR008144"
/db_xref="InterPro:IPR008145"
/db_xref="InterPro:IPR016313"
/db_xref="InterPro:IPR019583"
/db_xref="InterPro:IPR019590"
/db_xref="InterPro:IPR020590"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR035759"
/db_xref="InterPro:IPR036028"
/db_xref="InterPro:IPR036034"
/db_xref="PDB:2BYG"
/db_xref="PDB:2HE2"
/db_xref="UniProtKB/Swiss-Prot:Q15700"
/protein_id="CAH18680.1"
/translation="MGIFKSSLFQALLDIQEFYEVTLLNSQKSCEQKIEEANQVLQKW
EKTSLLAPCHDRLQKSSELTDCSGSKENASCIEQNKENQSFENETDETTTQNQGRCPA
QNCSVEAPAWMPVHHCTKYRYQDEDAPHDHSLPRLTHEVRGPELVHVSEKNLSQIENV
HGYVLQSHISPLKASPAPIIVNTDTLDTIPYVNGTEIEYEFEEITLERGNSGLGFSIA
GGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALK
EAGSIVRLYVRRRRPILETVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIID
GGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTTIYMTDP
YGPPDITHSYSPPMENHLLSGNNGTLEYKTSLPPISPGRYSPIPKHMLVDDDYTRPPE
PVYSTVNKLCDKPASPRHYSPVECDKSFLLSAPYSHYHLGLLPDSEMTSHSQHSTATR
QPSMTLQRAVSLEGEPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGEL
QRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKIHDLREQM
MNHSMSSGSGSLRTNQKRSLYVRAMFDYDKSKDSGLPSQGLSFKYGDILHVINASDDE
WWQARRVMLEGDSEEMGVIPSKRRVERKERARLKTVKFNAKPGVIDSKGSFNDKRKKS
FIFSRKFPFYKNKEQSEQETSDPERGQEDLILSYEPVTRQEINYTRPVIILGPMKDRI
NDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVISREQMEKDIQEHKFIEAGQYN
DNLYGTSVQSVRFVAERGKHCILDVSGNAIKRLQVAQLYPIAIFIKPRSLEPLMEMNK
RLTEEQAKKTYDRAIKLEQEFGEYFTAIVQGDTLEDIYNQCKLVIEEQSGPLIWIPSK
EKL"
BASE COUNT 1626 a 1046 c 1162 g 1306 t
ORIGIN
1 acagaagaaa aaaatgaaag ggacagcaag ctggattctg agttactgag gggaagactc
61 agcctggatt tcaaaactga acactgaagt ggtttgcaac agttacctgg ctcttggcct
121 caatccagct ggatcaaact gagacctgaa aagagatatt gactcctgtg gcagtggaaa
181 gacccaagaa tgccagtcaa gaagacaggt gggccataag atactgaccg agctttatca
241 ttactggaag aatactgcaa aaaattaagg aaaccagagg agcagctgtt gaaaaatgcg
301 gttaaaaagg tgatgggtat ctttaagagc agcttattcc aagctttgct agatatccaa
361 gaattttatg aggtgacatt gctaaattct caaaaaagtt gtgagcagaa gatagaagaa
421 gccaatcaag ttttacagaa atgggagaag acatcccttc ttgctccgtg ccatgacaga
481 cttcaaaaat cttcagagct tacagattgc agtggatcaa aggaaaatgc ttcatgtatt
541 gagcaaaata aagaaaatca gagttttgaa aatgaaactg atgagacgac aactcaaaac
601 caaggcagat gcccagccca gaattgttca gtggaagccc ctgcttggat gcctgtccac
661 cactgtacta agtatcgata tcaagatgag gacgctccac atgatcattc cttacctcga
721 ctaacccacg aagtaagagg cccagaactc gtgcatgtat cagaaaagaa cctctctcaa
781 atagaaaatg tccatggata tgtcttgcag tctcatattt ctcctctgaa ggccagtcct
841 gctcctataa ttgtcaacac agatactttg gacacaattc cttatgtcaa tgggacagaa
901 attgaatatg aatttgaaga aattacactg gagaggggga attctggcct gggattcagt
961 attgctgggg ggacagataa tccccacatt ggagatgacc ctggcatatt tattacgaag
1021 attataccag gaggtgctgc agcagaggat ggcagactca gggtcaatga ttgtatcttg
1081 cgggtgaatg aggttgatgt gtcagaggtt tcccacagta aagcggtgga agccctgaag
1141 gaagcagggt ctatcgttcg gctgtatgtg cgtagaagac gacctatttt ggagaccgtt
1201 gtggaaatca aactgttcaa aggccctaaa ggtttaggct tcagtattgc aggaggtgtg
1261 gggaaccaac acattcctgg agacaacagc atttatgtaa ctaaaattat agatggagga
1321 gctgcacaaa aagatggaag gttgcaagta ggagatagac tactaatggt aaacaactac
1381 agtttagaag aagtaacaca cgaagaggca gtagcaatat taaagaacac atcagaggta
1441 gtttatttaa aagttggcaa acccactacc atttatatga ctgatcctta tggtccacct
1501 gatattactc actcttattc tccaccaatg gaaaaccatc tactctctgg caacaatggc
1561 actttagaat ataaaacctc cctgccaccc atctctccag gaaggtactc accaattcca
1621 aagcacatgc ttgttgacga cgactacacc aggcctccgg aacctgttta cagcactgtg
1681 aacaaactat gtgataagcc tgcttctccc aggcactatt cccctgttga gtgtgacaaa
1741 agcttcctcc tctcagctcc ctattcccac taccacctag gcctgctacc tgactctgag
1801 atgaccagtc attcccaaca tagcaccgca actcgtcagc cttcaatgac tctccaacgg
1861 gccgtctccc tggaaggaga gcctcgcaag gtagtcctgc acaaaggctc cactggcctg
1921 ggcttcaaca ttgtcggtgg ggaagatgga gaaggtattt ttgtgtcctt cattctggct
1981 ggtggaccag cagacctaag tggggagctc cagagaggag accagatcct atcggtgaat
2041 ggcattgacc tccgtggtgc atcccacgag caggcagctg ctgcactaaa gggggctgga
2101 cagacagtga cgattatagc acaatatcaa cctgaagatt acgctcgatt tgaggccaaa
2161 atccatgacc tacgagagca gatgatgaac cacagcatga gctccgggtc cggatccctg
2221 cgaaccaatc agaaacgctc cctctacgtc agagccatgt tcgactacga caagagcaag
2281 gacagtgggc tgccaagtca aggacttagt tttaaatatg gagatattct ccacgttatc
2341 aatgcctctg atgatgagtg gtggcaagcc aggagagtca tgctggaggg agacagtgag
2401 gagatggggg tcatccccag caaaaggagg gtggaaagaa aggaacgtgc ccgattgaag
2461 acagtgaagt ttaatgccaa acctggagtg attgattcga aagggtcatt caatgacaag
2521 cgtaaaaaga gcttcatctt ttcacgaaaa ttcccattct acaagaacaa ggagcagagt
2581 gagcaggaaa ccagtgatcc tgaacgagga caagaagacc tcattctttc ctatgagcct
2641 gttacaaggc aggaaataaa ctacacccgg ccggtgatta tcctggggcc catgaaggat
2701 cggatcaatg acgacttgat atctgaattc cctgataaat ttggctcctg tgtgcctcat
2761 actacgaggc caaagcgaga ctacgaggtg gatggcagag actatcactt tgtcatttcc
2821 agagaacaaa tggagaaaga tatccaagag cacaagttta tagaagccgg ccagtacaat
2881 gacaatttat atggaaccag tgtgcagtct gtgagatttg tagcagaaag aggcaaacac
2941 tgtatacttg atgtatcagg aaatgctatc aagcggttac aagttgccca gctctatccc
3001 attgccatct tcataaaacc caggtctctg gaacctctta tggagatgaa taagcgtcta
3061 acagaggaac aagccaagaa aacctatgat cgagcaatta agctagaaca agaatttgga
3121 gaatatttta cagctattgt ccaaggagat actttagaag atatatataa ccaatgcaag
3181 cttgttattg aagagcaatc tgggcctctc atctggattc cctcaaagga aaagttataa
3241 attagctact gcgcctctga caacgacaga agagcattta gaagaacaaa atatatataa
3301 catactactt ggaggctttt atgtttttgt tgcatttatg tttttgcagt caatgtgaat
3361 tcttacgaat gtacaacaca aactgtatga agccatgaag gaaacagagg ggccaaaggg
3421 tgggacagaa aagacattgc agtatgaagg aaggctttgg tttgctcaaa gtgccaggtg
3481 tagggatgaa cctctgacgg gctttctgcc caagagatga gatgagagcc tcctcacccc
3541 agcagatgtc cagagctgat ttagctgcag agctctctgt gtcttttgct ttaaagaaaa
3601 attgccagca ctcgaacctc atcagccttc ccattaccca catctgtaat tggtacactt
3661 tgaattttat aactatgcac atcttttgat ttcttaacaa gcaaatgaaa gaaagaagga
3721 aaaaagaaag gaatcccttt ggagacgaca tactatcagg gaaggataag tgtgtagttt
3781 tttgactggc atctgcaaag acaagaattt cataaaattt gcaagtgtat ggaggactaa
3841 cctcactgac atgaggggat tccacctggg attagcttta tgattgttga ttgcctattt
3901 tgccatttat aaactgaaag aaggcactaa agatgagaat aatttataca ataaaaatat
3961 attaaatgta tagaaacaaa tttctatagg ttaaaaaagt tttgtgaaat attttgtaaa
4021 gactaatatt gaaagactaa atgtatgcaa catcagcaga tgatcaaatt caagacctga
4081 aagttgcact ctcccttttg ttgccaatga tctgttaaga gcatctgagt tccttttaag
4141 tctgacaaag acttcttcct cacttacctc ccttccacat tagtgataca ctctcatgca
4201 gcacatccct taatgagttg ccctcatgga tatttttgga agacatttgg ttaatgcatt
4261 tttttatgct gatggctttt cagagacaaa cttatgcaaa tgatctaaag ggaagttttt
4321 gctttcctct agttaaataa cctgagcctg ccatgcaaat agttgaataa ctttgttcct
4381 agttactgac atacaattct taaaggacca tttagcattt tggccaacaa tgagtaatta
4441 ggattagtac ctttttgttt tacagagtaa ctgagagttt tgtaacatcc agagatggta
4501 ctagagccaa tgagagatct gttcctagat gcactatttc tttgaggaag agagagaaga
4561 gaagtgtctg gttgggggtg agggggtgca gacttttttg tttctatgta cagagcaaag
4621 agatagagtc acaaggaaag acaattaatg actttgagct caaccaactg aactgccttt
4681 cttggagctg cacctggacc aagtttattt tttaacaatt ataataacga tgatttaaaa
4741 aaagaaacct cccaaagcct ataaactgaa ctagaagagt tggtttccca ctttagagtg
4801 gatggcgaca tcagcattgc ttttgcccat ggtgtttggg gagagacttt tcagtgataa
4861 taaccactct actctgggtt ctgtgcatgc ccagactaag ccccatcgcc ttatttctgg
4921 ggtacatcca gacctggcag ggattctgcc acactgtgca gcaaaccagc atgtaggctg
4981 ggtaggagag caagagatag agccatcaga gtgatggggc ttcttcacag taagaacatc
5041 ggagcttaga atgagagtct ctttccaaaa acaggcattg ttcatcttac gctaaacatc
5101 attgtctgcc tggctacagt caccaaaaaa aaaaaaaaaa
//