LOCUS CR749290 5260 bp mRNA linear HTC 07-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp686L17246 (from clone DKFZp686L17246).
ACCESSION CR749290
VERSION CR749290.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5260)
AUTHORS Koehrer K., Beyer A., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (17-AUG-2004) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by BMFZ (Biomedical Research Center at the
Heinrich-Heine-University, Duesseldorf/Germany) within the cDNA
sequencing consortium of the German Genome Project.
This clone (DKFZp686L17246) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp686L17246
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..5260
/db_xref="H-InvDB:HIT000306329"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686L17246"
/tissue_type="salivary gland"
/note="SNF2 histone linker PHD RING helicase,
differentially spliced"
/db_xref="taxon:9606"
CDS 300..2285
/codon_start=1
/gene="DKFZp686L17246"
/product="hypothetical protein"
/db_xref="GOA:Q149N8"
/db_xref="H-InvDB:HIT000306329.13"
/db_xref="HGNC:HGNC:19336"
/db_xref="InterPro:IPR000330"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR001841"
/db_xref="InterPro:IPR001965"
/db_xref="InterPro:IPR005818"
/db_xref="InterPro:IPR011011"
/db_xref="InterPro:IPR013083"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR017907"
/db_xref="InterPro:IPR019786"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036388"
/db_xref="InterPro:IPR036390"
/db_xref="InterPro:IPR038718"
/db_xref="PDB:2M85"
/db_xref="PDB:4QN1"
/db_xref="UniProtKB/Swiss-Prot:Q149N8"
/protein_id="CAH18145.1"
/translation="MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPC
PGEDVEKQKKEPMSICDKGILVESSFSGEVLEDLGWLQKKRRIKLYQKPEGNHIIKVG
IYLLEAGLAKLDFLSDANSRMKKFNQLMKKVMEKLHNSIIPDVLEEDEDDPESEPEGQ
DIDELYHFVKQTHQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATES
ALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALI
LTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGKLKKTEIQNIEFEPKEKVQCPPTRVM
ILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFEGLVKQIKGHG
FSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRKSGNKDTDSEYLPSDTSDDDGD
PYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGHCPATSDSGITDVAMSKSTC
ISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFECICGELDQIDRKPRVQC
LKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSSICHQWVDEIN
RHVRSSSLRVLVYQGVKKDGFLQPHFFGRTGYSYHYL"
BASE COUNT 1671 a 990 c 1201 g 1398 t
ORIGIN
1 actcatgaag ccagcgcagg agaaaggggg cggggtgctc tgacgagcgc gttcgccttg
61 accccacgct acagcgcgcg cccggcagct aggcgctgtg gtttctgggt ctcccggggg
121 acccctacac gttccggcaa aaagcgctcg tgcccacctc aagcccatgt tcggtgggtg
181 gcgaatgcgt gcccgtgatc tgctgggtct gtagaggagc gcaggcctgg tgcaaacaga
241 ctcaagaggc tcggagaacc agcttggagt tcacagttac cagccaagaa aacttgaaaa
301 tgagcagccg acggaaacgt gctcctccag tgagggtaga tgaggaaaag aggcagcagc
361 ttcattggaa tatgcatgag gacagaagga atgaacctat catcataagt gatgatgacg
421 agcagccctg cccaggtgaa gatgtagaga aacaaaaaaa agaaccgatg agtatttgtg
481 acaagggtat tctggtggag tcatccttca gtggtgaagt gttagaagat ttggggtggc
541 tacaaaagaa gagaagaata aaactctatc agaaaccaga aggaaatcac attatcaagg
601 ttggaattta tcttttggaa gctggcctag caaaactaga cttcttgagt gatgcaaatt
661 caagaatgaa aaagttcaat cagctcatga agaaagtaat ggaaaagtta cacaattcta
721 ttattccaga tgtgttggaa gaggatgaag atgatccgga gagtgagcca gagggacaag
781 acattgacga gctgtatcac tttgtgaaac aaacacatca gcaagaaacg cagtccatcc
841 aagtggatgt ccagcatcct gcattgatcc ctgtgttgag accctaccaa agagaggctg
901 tcaattggat gctacaacaa gagtgtttca gaagcagtcc tgctactgaa agtgccctgc
961 acttcttatg gcgagagatt gttacatctg agggtctgaa actctactat aatccatata
1021 caggctgcat cattcgtgag tacccaaatt ctgggccgca gttgcttggt ggaattttag
1081 cagatgagat gggtcttgga aagacagtgg aggttttggc tctgattctg acacatactc
1141 gacaagatgt caagcaagat gctctcactc ttcccgaggg aaaagtggtg aattatttta
1201 ttccgtcaca ttattttgga ggaaaactga aaaagacaga aatccagaat atcgaatttg
1261 aaccaaaaga aaaagttcaa tgccctccta cacgtgtgat gatactgaca gctgtgaaag
1321 aaatgaatgg aaaaaaagga gtgtccatcc tttccatcta taagtatgtc agttctatat
1381 atagatacga tgttcaacgg aacaggagtc ttttgaaacg gatgctgaaa tgtttaattt
1441 ttgaaggtct cgtgaaacag atcaaaggcc atggtttttc tgggactttt acattgggaa
1501 agaattacaa ggaagaggat atatgtgata aaacaaaaaa gcaggcagta gggagtccaa
1561 ggaaaattca gaaagaaact agaaaatcag ggaacaagga cacagattct gaatacttgc
1621 catcagacac ctctgatgat gatggtgatc cttactatta ttattataag tccaggagaa
1681 atcgcagtaa attgaggaaa aagcttgttc catccacaaa aaaaggaaaa agtcaaccat
1741 ttatcaatcc cgattcacaa ggtcactgtc cagctactag cgactctgga ataactgatg
1801 ttgctatgtc taaaagtaca tgtatctctg aattcaacca agaacatgaa acagaggact
1861 gtgctgaatc tctaaatcat gctgatagtg atgtaccacc ttctaatacc atgagtccct
1921 ttaacacctc tgattaccgc tttgagtgta tatgtggtga acttgatcag atagatcgta
1981 agcctcgtgt tcaatgcctg aagtgtcacc tgtggcaaca tgcaaagtgt gtgaattatg
2041 atgagaaaaa tctgaagatc aagccttttt actgccccca ctgccttgtt gcaatggaac
2101 cagtgtcaac aagagcaact ctgatcatct ctccaagttc catctgtcac cagtgggtgg
2161 atgagatcaa caggcatgtg aggtcgtcat ctcttcgagt cttggtatat caaggagtga
2221 agaaagatgg ctttttacaa cctcattttt ttggcagaac aggatatagt tatcattacc
2281 tatgatgtac tgcgttcaga attaaattat gtcgatatcc cacatagcaa tagtgaggat
2341 gggcgtcgcc tacggaacca gaagcgctat atggctatcc cgagccccct ggtagctgtg
2401 gagtggtgga ggatttgcct tgatgaagct cagatggttg agtgtcccac agtaaaagct
2461 gcagaaatgg cccagcgttt gagtgggatt aatcgatggt gtatcagtgg cactccagta
2521 cagagaggat tagaggatct ttttgggtta gtggtctttc ttggtattga accttactgt
2581 gtcaaacact ggtgggttcg acttctctat cggccttact gcaagaagaa tcctcagcat
2641 ctctacagct ttattgccaa gatactgtgg aggtctgcaa agaaagatgt gattgaccaa
2701 atccaaatac caccacaaac cgaagaaata cactggctcc acttttctcc agtggaaagg
2761 catttctatc accgtcagca tgaggtgtgc tgccaggatg tggtggtaaa actcaggaag
2821 atttctgact gggctctgaa gctcagcagc ctagacagaa ggactgtcac ctctatcctg
2881 tatccattgc tgaggctcag acaggcctgc tgtcacccac aggctgttcg tggagagttc
2941 ttgccactcc aaaaaaagca ccatgacaat ggaagagctg ctgacatctt tgcagaagaa
3001 atgtggaact gaatgtgaag aagcacatcg acagctagtt tgtgctctca atggcttagc
3061 aggcattcat attattaaag gtagaaggtg agtatgcctt ggcagcagaa ttgtacagag
3121 aagtgttgcg ctcctcggag gaacacaaag gaaaactcaa aactgattca cttcaaagac
3181 ttcatgctac ccataacttg atggaattgt tgatagccag gcacccaggg ataccaccta
3241 ccttgcgtga tggccgactt gaggaagagg ccaaacagct gcgagagcac tacatgagca
3301 agtgtaatac agaagttgct gaagcccagc aagctttata tcctgtgcag cagaccatcc
3361 atgagcttca aagaaagatt cattctaatt ctccttggtg gctaaatgtg atccacagag
3421 caatagaatt tactattgat gaggagctag ttcagcgagt gcgaaatgaa ataaccagca
3481 actacaagca acaaactggc aagctttcta tgtcagagaa gttccgtgat tgcagaggtc
3541 ttcagttctt acttacaaca caaatggaag agctaaataa atgccagaag ctagtaagag
3601 aggctgtaaa aaacctggag ggacctccat ctcgtaatgt tattgagtct gcaacagtct
3661 gtcacctccg accagccaga cttcctctca actgctgtgt cttttgtaaa gctgatgaat
3721 tgttcacaga gtatgaatca aagctatttt ccaacacagt caaaggccag actgcaatat
3781 ttgaggagat gatagaagat gaagaaggac tggtggatga tcgagcacct accaccaccc
3841 ggggtctctg ggcaataagt gagacagagc gatctatgaa agcaatacta tcatttgcaa
3901 aatcacatag gtttgatgtt gaatttgttg atgaaggaag cacttcaatg gatctctttg
3961 aagcatggaa gaaggaatat aagttgcttc atgaatattg gatggctctg aggaatcgtg
4021 tgtctgctgt tgatgaactt gcaatggcta cagaacgact aagagtgcgt gatcctaggg
4081 agccaaagcc taatccgcct gttcttcata tcattgaacc acatgaggta gaacaaaacc
4141 gaataaaact actaaatgat aaagctgttg ctacatcaca gcttcagaaa aaacttgggc
4201 agcttcttta cctaactaat ttggagaagg tattgtttct aagacatgct actttttcct
4261 atgctgcatt atcataaacc actttagtga ctcctttcat aattaatggt gcaaattgtt
4321 gtaattagta tttggtgtta tatgagtcag aacactacct atgtctctac aatagcttca
4381 gagatcacaa aagaatattg tatctataga aatttattat gcagatgata tagaaggcat
4441 gcactcgata gtagagaaca atgtaaatgg actgtagttc aaagccttga atagtaaaag
4501 tattaaaaca tatctcggtg aaactggcat aatgcaattt atacacatgc attcattcat
4561 caatacaaaa atatgttgta atttgttatt tgaaactgaa gtgtgtttcg aaagctacta
4621 aatcagagta catggtaata aaggtagact tcaaatatta agtaattcaa aacacatgtt
4681 ctgagttatg atctgagtat tatactggac actgatgaat tggtgggtca ttgattaaat
4741 ataatttcat tttattgcag gaattcatat tttgctagtt ggcagagaac cttctagggg
4801 caagatatag tagtaaatat ttggataggg caagtgagga caagatatag atttgaattc
4861 ttctggaaac tggtataaca tatacttaag tgaatcagta aatctcagac aaaatgaaaa
4921 gttagacatt cattatagat atagcatggc gactaagaag gtagactttg gaactggaca
4981 gcccaatttt gaatcgtgac tcaactgttt tctagatatg tgactttatt taagttattc
5041 acctttcctc gcatcatcag taaaatgaga atgatgtcaa cactacttta tagtataggg
5101 ctgtcttgag gattgtgtga attaatacat gtaaaatgct agagtagttt ctgatctatt
5161 aagcactttc taggtttttg ctgctattaa tatttttaag atcattatta ctgttatgat
5221 taccaacact tattctgaaa gataaaaaaa aaaaaaaaaa
//