LOCUS CR749269 2829 bp mRNA linear HTC 19-AUG-2004
DEFINITION Homo sapiens mRNA; cDNA DKFZp686K04137 (from clone DKFZp686K04137).
ACCESSION CR749269
VERSION CR749269.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2829)
AUTHORS Poustka A., Albert R., Moosmayer P., Schupp I., Wellenreuther R.,
Mewes H.W., Weil B., Amid C., Osanger A., Fobo G., Han M.,
Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (17-AUG-2004) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by DKFZ (German Cancer Research Center,
Heidelberg/Germany)
within the cDNA sequencing consortium of the German Genome Project.
This clone (DKFZp686K04137) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp686K04137
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..2829
/db_xref="H-InvDB:HIT000306309"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="686 (synonym: hlcc3). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp686K04137"
/tissue_type="prostate"
/note="protein-tyrosine-phosphatase receptor-type gamma,
N-terminus truncated, differentially spliced"
/db_xref="taxon:9606"
CDS <1..2121
/codon_start=1
/gene="DKFZp686K04137"
/product="hypothetical protein"
/db_xref="GOA:P23470"
/db_xref="H-InvDB:HIT000306309.12"
/db_xref="HGNC:HGNC:9671"
/db_xref="InterPro:IPR000242"
/db_xref="InterPro:IPR000387"
/db_xref="InterPro:IPR001148"
/db_xref="InterPro:IPR003595"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR016130"
/db_xref="InterPro:IPR029021"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036398"
/db_xref="InterPro:IPR041887"
/db_xref="PDB:2H4V"
/db_xref="PDB:2HY3"
/db_xref="PDB:2NLK"
/db_xref="PDB:2PBN"
/db_xref="PDB:3JXH"
/db_xref="PDB:3QCB"
/db_xref="PDB:3QCC"
/db_xref="PDB:3QCD"
/db_xref="PDB:3QCE"
/db_xref="PDB:3QCF"
/db_xref="PDB:3QCG"
/db_xref="PDB:3QCH"
/db_xref="PDB:3QCI"
/db_xref="PDB:3QCJ"
/db_xref="PDB:3QCK"
/db_xref="PDB:3QCL"
/db_xref="PDB:3QCM"
/db_xref="PDB:3QCN"
/db_xref="PDB:5E5R"
/db_xref="UniProtKB/Swiss-Prot:P23470"
/protein_id="CAH18125.1"
/translation="SRFITVNPAEKNTSGMISRPAPGRMEWIIPLIVVSALTFVCLIL
LIAVLVYWRKCFQTAHFYVEDRSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELY
SNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGK
DSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKG
RRKCDQYWPTENSEEYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNE
RVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGTYIVI
DSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQ
LHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSER
ARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIV
MLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQD
DYVLEVRHFQYPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCA
LTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAMLSLVSTKENGNGPM
TVDKNGAVLIADESDPAESMESLV"
BASE COUNT 862 a 573 c 595 g 799 t
ORIGIN
1 agcagattta tcactgttaa tccagcggaa aaaaacacct ctggaatgat aagccgccct
61 gctccaggga ggatggagtg gatcatccct ctgattgtgg tatcagcctt gaccttcgtg
121 tgcctcatcc ttctcattgc tgtgctcgtt tactggagaa aatgttttca gactgctcat
181 ttctatgtgg aagacagaag ttcacctcga gtggtcccta atgaaagtat tcctattatt
241 cctattccgg atgacatgga agccattcct gtcaaacagt ttgtcaaaca catcggtgag
301 ctctattcta ataaccagca tgggttctct gaggattttg aggaagtcca gcgctgtact
361 gctgatatga acatcactgc agagcattcc aatcatccag aaaacaagca caaaaacaga
421 tacatcaaca ttttagcata tgatcacagt agggtgaagt taagaccttt accaggaaaa
481 gactctaagc acagcgacta cattaatgca aactatgttg atggttacaa caaagcaaaa
541 gcctacattg ccacccaagg acctttgaag tctacatttg aagatttctg gaggatgatt
601 tgggaacaaa acactggaat cattgtgatg attacgaacc ttgtggaaaa aggaagacga
661 aaatgtgatc agtattggcc aacagagaac agtgaggaat atggaaacat tattgtcacg
721 ctgaagagca caaaaataca tgcctgctac actgttcgtc gtttttcaat cagaaataca
781 aaagtgaaaa agggtcagaa gggaaatccc aagggtcgtc agaatgaaag ggtagtgatc
841 cagtatcact atacacagtg gcctgacatg ggagttcccg agtatgccct tccagtactg
901 actttcgtga ggagatcctc agcagctcgg atgccagaaa cgggccctgt gttggtgcac
961 tgcagtgctg gtgtgggcag aacaggcacc tatattgtaa tagacagcat gctgcaacag
1021 ataaaagaca aaagcacagt taacgtcctg ggattcctga agcatatcag gacacagcgt
1081 aactacctcg tccagactga ggagcagtac attttcatcc atgatgcctt gttggaagcc
1141 attcttggaa aggagactga agtatcttca aatcagctgc acagctatgt taacagcatc
1201 cttataccag gagtaggagg aaagacacga ctggaaaagc aattcaagct ggtcacacag
1261 tgtaatgcaa aatatgtgga atgtttcagt gctcagaaag agtgtaacaa agaaaagaac
1321 agaaactctt cagttgtgcc atctgagcgt gctcgagtgg gtcttgcacc attgcctgga
1381 atgaaaggaa cagattacat taatgcttct tatatcatgg gctattatag gagcaatgaa
1441 tttattataa ctcagcatcc tctgccacat actacgaaag atttctggcg aatgatttgg
1501 gatcataacg cacagatcat tgtcatgctg ccagacaacc agagcttggc agaagatgag
1561 tttgtgtact ggccaagtcg agaagaatcc atgaactgtg aggcctttac cgtcaccctt
1621 atcagcaaag acagactgtg cctctctaat gaagaacaaa ttatcatcca tgactttatc
1681 cttgaagcta cacaggatga ctatgtctta gaagttcggc actttcagta tcccaaatgg
1741 cctaacccag atgcccccat aagtagtacc tttgaactta tcaacgtcat caaggaagag
1801 gccttaacaa gggatggtcc caccattgtt catgatgagt atggagcagt ttcagcagga
1861 atgttatgtg cccttaccac cctgtcccag caactggaga atgaaaatgc tgtggatgtt
1921 ttccaggttg caaaaatgat caatcttatg aggcctggag tattcacaga cattgaacaa
1981 taccagttca tctataaagc aatgcttagc ttggtcagca ctaaagaaaa tggaaatggt
2041 cccatgacag tagacaaaaa tggtgctgtt cttattgcag atgaatcaga ccctgctgag
2101 agcatggagt ccctagtgtg actggaatcc tgaaagggca cttaatttgt aaacttctga
2161 agactgagaa cttttttgag gccttttttg ccagactcta ggttatacaa taacccagtt
2221 acttttttac actgataaaa gttttgatat ttattttttg ccattttatg tcttaatggt
2281 atcctactga gcatttgcac ctctgttcat ttcacacagt gaaacgcaat tttacctagt
2341 ttgcactata tgatcagtgt tactgcctat aatcttatac aacagcaaac cctgatgtga
2401 cattccatga cgacatacat gctacttttt tttagttcaa tacagtgaag gtctttgtta
2461 tgacagtgaa tattgctttt attattatta ttgctgaagt ggttgcattc tactagcagg
2521 caatgctgta cttttcttca gtcctcctct cctttttatt ttaggcactg ttcaatactg
2581 tatgccttct gtattttaat ggagtggata gcattgtttt cttttacaga ctagcaggct
2641 actgggacct aaaaaggtct gttaatgtca tggccttgaa acagttccat ttatgctggt
2701 taagagatcc cttaagaagt tagaaggctt aagaactgct tcatgtgaac atcccttatt
2761 agttacaaag ttatattcac agttttttaa aaatgtgtca aaataaagga taactctgta
2821 ttccaaaaa
//