LOCUS CR627442 2825 bp mRNA linear HTC 07-OCT-2008
DEFINITION Homo sapiens mRNA; cDNA DKFZp781K0371 (from clone DKFZp781K0371).
ACCESSION CR627442
VERSION CR627442.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2825)
AUTHORS Koehrer K., Beyer A., Mewes H.W., Weil B., Amid C., Osanger A.,
Fobo G., Han M., Wiemann S.
CONSRTM The German cDNA Consortium
JOURNAL Submitted (22-SEP-2004) to the INSDC. MIPS, Ingolstaedter
Landstr.1, D-85764 Neuherberg, GERMANY
COMMENT Clone from S. Wiemann, Molecular Genome Analysis, German Cancer
Research
Center (DKFZ); Email s.wiemann@dkfz-heidelberg.de;
sequenced by BMFZ (Biomedical Research Center at the
Heinrich-Heine-University, Duesseldorf/Germany) within the cDNA
sequencing consortium of the German Genome Project.
This clone (DKFZp781K0371) is available at the RZPD Deutsches
Ressourcenzentrum fuer Genomforschung GmbH in Berlin, Germany.
Please contact RZPD for ordering:
http://www.rzpd.de/cgi-bin/products/cl.cgi?CloneID=DKFZp781K0371
Further information about the clone and the sequencing project is
available at http://mips.gsf.de/projects/cdna/
FEATURES Location/Qualifiers
source 1..2825
/db_xref="H-InvDB:HIT000306208"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="adult"
/clone_lib="781 (synonym: hlcc4). Vector pSport1_Sfi; host
DH10B; sites SfiIA + SfiIB"
/clone="DKFZp781K0371"
/tissue_type="retina"
/note="staufen homolog 2, differentially spliced,
alternative start"
/db_xref="taxon:9606"
CDS 309..1253
/codon_start=1
/gene="DKFZp781K0371"
/product="hypothetical protein"
/db_xref="GOA:Q9NUL3"
/db_xref="H-InvDB:HIT000306208.14"
/db_xref="HGNC:HGNC:11371"
/db_xref="InterPro:IPR014720"
/db_xref="InterPro:IPR032478"
/db_xref="UniProtKB/Swiss-Prot:Q9NUL3"
/protein_id="CAH10527.1"
/translation="MDDDKDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVT
RVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAG
PEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPN
KKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHL
SPDVYQEMEASRHKVISDTTLGYLSPKDMNQPSSSFFSISPTSNSSATIARELLMNGT
SSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQV"
BASE COUNT 942 a 505 c 516 g 862 t
ORIGIN
1 cggggagccc gaggggtgga agccggcggc ggccgagcgg ggtcagttct ctgtagtgtt
61 tgccaatgtt ggagccgtct gcaaagtgtc cccggcaaga aggtatcatt gcccagtgcc
121 taagatcttt tatgttcagc tcactgtagg aaataatgaa ttttttgggg aaggaaagac
181 tcgacaagct gctagacaca atgctgcaat gaaagccctc caagcactgc agaatgaacc
241 tattccagaa agatctcctc agtgttatcc tattttttgt gatttagaat ggtgaatcag
301 gaaaggatat ggatgatgac aaagatgcaa ataagtctga gatcagctta gtgtttgaaa
361 ttgctctgaa gcgaaatatg cctgtcagtt ttgaggttat taaagaaagt ggaccaccac
421 atatgaaaag ctttgttact cgagtgtcag taggagagtt ctctgcagaa ggagaaggaa
481 atagcaaaaa actctccaag aagcgcgctg cgaccaccgt cttacaggag cttaaaaaac
541 ttccacctct tcctgtggtg gaaaagccaa aactattttt taaaaaacgc cctaaaacaa
601 tagtaaaggc cggaccagaa tatggccaag ggatgaaccc tattagccgc ctggcgcaaa
661 ttcaacaggc caaaaaggaa aaggagccgg attatgtttt gctttcagaa agaggaatgc
721 ctcgacgtcg agaatttgtg atgcaggtga aggtaggcaa tgaagttgct acaggaacag
781 gacctaataa aaagatagcc aaaaaaaatg ctgcagaagc aatgctgtta caacttggtt
841 ataaagcatc cactaatctt caggatcaac ttgagaagac aggggaaaac aaaggatgga
901 gtggtccaaa gcctgggttt cctgaaccaa caaataatac tccaaaagga attcttcatt
961 tgtctcctga tgtttatcaa gagatggaag ccagccgcca caaagtaatc tctgacacta
1021 ctctaggcta tttgtcaccc aaagatatga accaaccttc aagctctttc ttcagtatat
1081 ctcccacatc gaatagttca gctacaattg ccagggaact ccttatgaat ggaacatctt
1141 ctacagctga agccataggt ttaaaaggaa gttctcctac tcccccttgt tctccagtac
1201 aaccttcaaa acaactggaa tatttagcaa ggattcaagg ctttcaggta tgaattaaaa
1261 gcaaaaacaa aaaacaaaac aattcattag cctcagattc ttcatctgta tacatcacaa
1321 ggctcattct tgcctgctag tatggcctac atgccactta cgttttaagt tatttaggaa
1381 cacaaaggac agacaaaaaa gccatatgca catgcctcat tttctcttat ttttgatcta
1441 tctagtaatt cttttgctgc ctgtctcttc tccattttcc ttcttctttt ttaagcattt
1501 ttcatattct tcactgtctt ctatttggtc ttgattaggt gcatctatct cttcgctctg
1561 tcttccacaa acaaaaattc tgccttcaga catttggtgt tagtatttca cactcagttc
1621 tccctttttt tacataagga ttgagtttct ttttatgatg attttacctt tatagcaatt
1681 ttgaattttg cattctgttg ctagtattga ttcaggtaca ccattaagat acaacattct
1741 agaagtctat taccttagga gttaattaaa catgatattt gaagaataat gaaatgcttt
1801 atagttgttt gaggcataac aatgtgtatt tgttttactg gatcatgttt tgaactgact
1861 agggagggta gcacctgcct cagatagtac caacaattct gtttcactgg gtagtctaaa
1921 actagcttat agtttaactt aacttgttgt gtatgtgaat ttagggatgg aaactttttt
1981 tcccctattt attctttgtt tccttctggg aaaaaacccc acaaaaatca gcactccttt
2041 atggatacat tggagctttt gaaagaattg taaactctag gaaggggaaa tatctgtgtc
2101 ttgatttctt agttgccttg aaaatcatgt actgaactgt aaccgctaac ttgactggat
2161 gaactagttt gcttgtgtgt agagagtgta ttgcttcctc agatttcact gttttcatct
2221 ccttttccat cttagtcttt attccttaag accaaaaact gtaatatcct ttagaaatgc
2281 tctagaagat ctgtattgtg tagaatgatc atgtatttat aaatatttta caagtttaga
2341 ttataaaatg aaaaagaagg tcatgtgttt tggggggtat tttgcatgtt cggatttttt
2401 ttcccttcac cgaacccttc tgattctttc aaactattgc caggtagttg ttagtgtttc
2461 taattggact cttaatatga acttcaagaa gctgttacca gttatcggct ctgtcatctg
2521 aaattttaac cacttaattt aaagttacaa ttttagaatt tgtttttgtt gttttacctt
2581 aagaaacaca ataaatcact gtttaaaaaa gatctcaatt tatataaagt actggaaaaa
2641 agctaagtaa tttttagttc tatctataat ctccgtagga tgaattagaa ataaattgtg
2701 atgaaaagaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2761 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaagaaa aaaaaaaaaa
2821 aaaaa
//