LOCUS CK335179 562 bp mRNA linear EST 12-MAY-2010 DEFINITION H3150C01-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3150C01 5', mRNA sequence. ACCESSION CK335179 VERSION CK335179.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 562) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3150 row: C column: 01 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..562 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3150C01-5" /db_xref="taxon:10090" /clone="H3150C01" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 159 a 121 c 112 g 170 t ORIGIN 1 tggaaacaca aatagtgcaa tttgtgcaat tggagaatct tgcctttttc ttgtctccct 61 cccacccccc aacacaaaca aacagaagct tgtacgtatt cattagaatg cactatcggg 121 tactctgaag tcattaacat tgaaatctgc accaggaggc aacaggggaa aaaaaagttt 181 gatcttcttt tccagtagag aatagtttgt gaaatgataa gggcattcta tctgcttgct 241 gtgaccagcg tgtgcacaca aaccttaaca agactgcaaa tactccagaa ggaagtcatt 301 tagttatgaa cgaaataaga aaagtgagaa cttcaaaagc tgtggtctta aatactagac 361 caggtttagt agctctgttt tgtcagtttt ctatttgccc tcttgagtac agggatggat 421 ggatggctgc tcaacacact cctcccctct ctcctttaag ctgtgtccag tgaaagctgt 481 ccttcctgta ttctgttctc tggtaatgta ataagcatga tggtgccttc tattacatca 541 ttccagtctt gctggtgatc ct //