LOCUS CK335178 580 bp mRNA linear EST 12-MAY-2010 DEFINITION H3150B11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3150B11 5', mRNA sequence. ACCESSION CK335178 VERSION CK335178.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 580) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3150 row: B column: 11 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..580 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3150B11-5" /db_xref="taxon:10090" /clone="H3150B11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 186 a 126 c 137 g 131 t ORIGIN 1 ggatagagcg gggcccgagc ctgtccgctg tggtagttcc gctcgcgctg ccccgccgcc 61 atgtcggcaa ccatcgagcg ggagttcgag gaactggatg ctcagtgtcg ctggcagccg 121 ttatacttgg aaattcgaaa tgaatcccat gactatcctc atagagtggc caagtttcca 181 gaaaacagaa accgaaacag atacagagat gtaagcccat atgatcacag tcgtgttaaa 241 ctgcaaagta ctgaaaatga ttatattaat gccagcttag ttgacataga agaggcacaa 301 agaagttaca tcttaacaca gggcccactt ccgaacacat gctgccattt ctggctcatg 361 gtgtggcagc aaaagaccaa agcagttgtc atgctaaacc gaactgtaga aaaagaatcg 421 gttaaatgtg cacagtactg gccaacggat gacagagaaa tggtgtttaa ggaaacggga 481 ttcagtgtga agctcttatc tgaagatgta aaatcatatt atacagtaca tctactacag 541 ttagaaaata tcaatactgg tgaaaccaga accatatctc //