LOCUS CK335116 608 bp mRNA linear EST 12-MAY-2010 DEFINITION H3143D06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3143D06 5', mRNA sequence. ACCESSION CK335116 VERSION CK335116.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 608) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3143 row: D column: 06 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..608 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3143D06-5" /db_xref="taxon:10090" /clone="H3143D06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 164 a 141 c 114 g 189 t ORIGIN 1 atcagactcc tgacttgagg aggaaaactt catggcctct ctgtccatcg gccatgacct 61 tctaagcaga ctgtttctcc tcacttccac tctgtctgaa tgaaaggggt gaacccacac 121 acatctaata aacaactttt atttctgggt ttagttttaa ccagtgtggt tctggataaa 181 caagagttcc tgtgtgggga ttagagtttt ccagcaacaa aatgtgaagg aaatgaacag 241 taaaccatat tcaatttttt ttctccctta ttcatgtttt ctcaggcttt gtttctccgc 301 tctgttaagc agtgacactt cctgaaatca ctgactcttt gaatgagagg cagtgggaac 361 aagactaatt tttgaagcaa atggttcctg agattatacc tcccacctgt gattttctca 421 tcttcacata atgaaaacac tccaagtttg atgacccgaa tcccttagtt ctcagagcag 481 aaatgtattc tacactcctt ttagctttgt ctggctccca cactcattaa gattctgaat 541 tgaaaaagca gtgtgcctca gtcacctcct ccttacagcc agcattagga cctgtagaga 601 agtggggc //