LOCUS CK335076 642 bp mRNA linear EST 12-MAY-2010 DEFINITION H3139D06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3139D06 5', mRNA sequence. ACCESSION CK335076 VERSION CK335076.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 642) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3139 row: D column: 06 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..642 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3139D06-5" /db_xref="taxon:10090" /clone="H3139D06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 141 a 151 c 144 g 206 t ORIGIN 1 gggagacatg tacaggaaat gagattttca ttttagctga gcctcattgc tgtcctcacc 61 aatggcccta ggcaggtggt ctgcatttat tattatgtcc tatgtctgca ttactcacgt 121 ttatctgtcc agatgtcctc atagaggacc catttatagg ctatcttaac accattgcca 181 gggatacttc cttgcccctt gctgcagtct gagggcttcc tacttcctac cccgacttgg 241 agagctggga gagaggaagt gcagagtatc ctcttctcat cagggcactg ctctttcgtg 301 tgggggaaaa gattgagcag ccaatcttca tgggtttaat aaggctactc cttgcgagtt 361 ttactacaaa tgacagcttt ttatcagtta ttctgcttgg tggcacataa tggctaaacc 421 tgtactctgt ggcgttcctc actacttgac tgctagttgt gccctaaggt gtccttcctc 481 attgagaaga gcctccttgg taaatggctc ctgtactgtg caaggccacc actgttagat 541 cttaggaaga aagtattacg taatgttatt gcactgctag ttcattttct tccttgcaga 601 gtaacttgtc gtaagggctt gttttcctcc ttgcagcacc at //