LOCUS CK334861 567 bp mRNA linear EST 12-MAY-2010 DEFINITION H3117G04-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3117G04 5', mRNA sequence. ACCESSION CK334861 VERSION CK334861.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 567) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3117 row: G column: 04 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..567 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3117G04-5" /db_xref="taxon:10090" /clone="H3117G04" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 150 a 120 c 132 g 165 t ORIGIN 1 aactgatctg gagagcctcg tcaaaagggg gtatacgaca attgatgaaa tacccaatac 61 aatacaaaac caaactgtgg atgtcatcaa agacgtcaaa aataccttgg actccattag 121 ctccaacatt aaggacatga gccaaagtat tcctattgag gatatgctgt tacaggtctc 181 ccattacctt aataacagca acagatactt aaaccaggag ctgcccaagc tggaagaata 241 tgactcgtac tggtggctgg gtggcttgat tgtctgcttt ctgctgactc tcattgtgac 301 cttctttttc ctgggcttgc tgtgtggtgt gtttggctat gacaagcatg ccaccccaac 361 tagaagaggc tgtgtgtcca acactggagg catcttcctc atggctgggg ttggattcgg 421 cttccttttt tgctggatat tggtgatcct tgtggttctt acgtttgttg ttggtgcaaa 481 tgtggaaaag ttgctctgcg aaccttatga aaacaagaaa ttattacagg ttttggacac 541 tccctatctg ctcaaggaac aatggca //