LOCUS CK334798 564 bp mRNA linear EST 12-MAY-2010 DEFINITION H3111D02-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3111D02 5', mRNA sequence. ACCESSION CK334798 VERSION CK334798.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 564) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3111 row: D column: 02 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..564 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3111D02-5" /db_xref="taxon:10090" /clone="H3111D02" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 171 a 113 c 98 g 182 t ORIGIN 1 tgcggtcctg agttcacatc cccagcagcc acataaaatg tttttgcctt tgcctttaat 61 ctcagagaca ggctgatgcc tagatacctc tgactctcca gccttagcca aaatagcaaa 121 ttctgattga gtaaaaggct atctctaaat aataaggtag aaagtgatag aggaagtatc 181 ctgttccagc cttgacatgt gtatgcatgg atgcacacac acacacacac acatacacaa 241 gaaatctctc ttgtatccct cacattccct cttaaaataa tatgttacat gggaagatgt 301 tgaagttata tctttgctgg catttttaaa aatttattta catctgtgta attttttatt 361 tattttgagg aaagaaacct gtaagaatat agtcactgag cctgtgagtt ggccatgcct 421 tagcttgagc ttacttagga tctttttgct ttaccatcag gaagattgta ctcttgtagc 481 ctttctgtct tcaaattaag gcagtgtaaa gttcaaaatc taacacaaga tactcaatac 541 tctgttataa aaaaggcttt gtgc //