LOCUS CK334777 592 bp mRNA linear EST 12-MAY-2010 DEFINITION H3109F08-3 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3109F08 3', mRNA sequence. ACCESSION CK334777 VERSION CK334777.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 592) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3109 row: F column: 08 Seq primer: -21M13 Forward POLYA=Yes. FEATURES Location/Qualifiers source 1..592 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3109F08-3" /db_xref="taxon:10090" /clone="H3109F08" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 167 a 122 c 112 g 191 t ORIGIN 1 gagtccttag ctggttaggg cacattcaag gctttgtcct atgtctatga gcctattcat 61 ctcagaagtt tttttatttt tctgttctga aacaatgtct tttaatatgg gttgctcttg 121 aaccagcaca cattcattct cctgcacttt gactccacca cttcgcttct gtttttagag 181 acaaggtggt cttgaacttg gggcagtctt cttcctctac ttccgggtgc atagtacagg 241 gtgagctgct gtgtgtgctt ggtcttaagc tattgtttct cctgcctcaa cttcccaagc 301 accaagacta cagatgtgca ccaccacacc ctggctggaa acactttgca gtaaaatgag 361 agactaaaat ttacatctaa ttttgttttc ttctccatga tttaaaaatc catcaaacca 421 attaacactt gcattaacca gggtggtcag taactggaga gagttgggaa gaggaatctc 481 tacagagcaa gctaagaaat aggcttcaaa tcacatttgt ttatattcaa tgaatgtcaa 541 atgagaacta atcagaaaaa aatattttaa atgtagagag gcaatttaat tc //