LOCUS CK334561 669 bp mRNA linear EST 12-MAY-2010 DEFINITION H3052G11-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3052G11 5', mRNA sequence. ACCESSION CK334561 VERSION CK334561.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 669) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3052 row: G column: 11 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..669 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3052G11-5" /db_xref="taxon:10090" /clone="H3052G11" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 198 a 114 c 145 g 212 t ORIGIN 1 gagcagtaga tgctaacctc cagtggcctt cattgctgcc catggttgcc tctctctttg 61 gggaatttca catataccta cttgtggtca tgtaccctcc ttaactcaga acttttaggg 121 aggagagggc tgggaagtta gtggggatag tatactgggg agaaacctat gcactgcata 181 gaaaacactt catttgacct taattatgag ttacacttgt taatttaata agattaagtt 241 attatgcact tgaatgagat gcccattgaa acatatgtct agcactttta tgaatgtcta 301 aaaggatagt agggtagtct tcatggctcc catggccacg tgaggtgctc atcctgtata 361 tgattgtctt cagtcctggg aaccttggcc tcgacagccc tatttatgca tacaagtaat 421 atatagatga atgtctcaag taaatatggc ttatggatgg tagtggataa tttgatgaga 481 actaaatatg cttagtttta tttggagaga ctagtacatt catgcacaaa ctgttggcca 541 ggctttgtat ttgtttatga ttattgacag agctttacat taaagaaaaa agtaaaagct 601 agcattagat attgacagct aatttgggaa aggtaaaata tatagctagc tagatgtcca 661 cccatactc //