LOCUS CK334554 642 bp mRNA linear EST 12-MAY-2010 DEFINITION H3051C06-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3051C06 5', mRNA sequence. ACCESSION CK334554 VERSION CK334554.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 642) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3051 row: C column: 06 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..642 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3051C06-5" /db_xref="taxon:10090" /clone="H3051C06" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 146 a 165 c 198 g 133 t ORIGIN 1 caacactgac ctggacactt gggcttctgc gtgtgtgtga gaccagaacc gtcgtcgcgt 61 ttcggggcca cagcctgttg ctggactcct aagactcctg cctgactgct gagcgactgg 121 tcctcagcgc cggcatgatg aagttcactg tggtggcggc ggcgttgctg ctgctgggcg 181 cggtgcgggc cgaggaggag gacaagaagg aggatgtggg cacggtggtc ggcatcgact 241 tggggaccac ctattcctgc gtcggtgtgt tcaagaacgg ccgcgtggag atcatagcca 301 acgatcaggg caaccgcatc acgccgtcgt atgtggcctt cactcctgaa ggggagcgtc 361 tgattggcga tgcggccaag aaccaactca cgtccaaccc cgagaacgcg gtcttcgatg 421 ccaagcgcct catcggacgc acttggaatg acccttcggt gcagcaggac atcaagttct 481 tgccattcaa ggtggttgaa aagaaaacta aaccgtacat tcaagttgat attggaggtg 541 ggcaaaccaa gacatttgcc ccagaagaaa tttctgccat ggttctcact aaaatgaagg 601 agactgctga ggcgtatttg ggaaagaagg ttacccatgc ag //