LOCUS CK334547 559 bp mRNA linear EST 12-MAY-2010 DEFINITION H3049C10-5 NIA Mouse 15K cDNA Clone Set Mus musculus cDNA clone H3049C10 5', mRNA sequence. ACCESSION CK334547 VERSION CK334547.1 DBLINK BioSample: SAMN00163148 KEYWORDS EST. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 559) AUTHORS Tanaka,T.S., Jaradat,S.A., Lim,M.K., Kargul,G.J., Wang,X., Grahovac,M.J., Pantano,S., Sano,Y., Piao,Y., Nagaraja,R., Doi,H., Wood,W.H. III, Becker,K.G. and Ko,M.S.H. TITLE Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray JOURNAL Proc. Natl. Acad. Sci. U.S.A. 97 (16), 9127-9132 (2000) PUBMED 10922068 COMMENT Contact: Dawood B. Dudekula Laboratory of Genetics National Institute on Aging/National Institutes of Health 333 Cassell Drive, Suite 4000, Baltimore, MD 21224-6820, USA Email: cdna@lgsun.grc.nia.nih.gov Plate: H3049 row: C column: 10 Seq primer: M13 Reverse POLYA=No. FEATURES Location/Qualifiers source 1..559 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="niaEST:H3049C10-5" /db_xref="taxon:10090" /clone="H3049C10" /sex="clones arrayed from a variety of cdna libraries" /clone_lib="SAMN00163148 NIA Mouse 15K cDNA Clone Set" /dev_stage="Clones arrayed from a variety of cDNA libraries" /lab_host="DH10B" /note="Vector: pSPORT1; Site_1: SalI; Site_2: NotI; This clone is among a rearrayed set of 15,247 clones from 11 embryo cDNA libraries (including preimplantation stage embryos from unfertilized egg to blastocyst, embryonic part of E7.5 embryos, extraembryonic part of E7.5 embryos, and E12.5 female mesonephros/gonad) and one newborn ovary cDNA library. Average insert size 1.5 kb. All source libraries are cloned unidirectionally with Oligo(dT)-Not primers. References include: (1) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray, 2000, Proc. Natl. Acad. Sci. U S A, 97: 9127-9132; (2) Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse develolpment, 2000, Development, 127: 1737-1749; (3) Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome, 1998, Hum Mol Genet 7: 1967-1978." BASE COUNT 181 a 107 c 111 g 160 t ORIGIN 1 ctcattttag tttttcaaga cacggtttct ctatgtagac caggctggcc ttgaactcag 61 cactctggag gcagaggcag aagaatctct gagtgacata gctttatata ccactcttcc 121 tctttgtact tgtattctaa acattaagtt acatatattt gtatgtatta cacatgtaca 181 tgcgagtgaa attttaaagg agaaatttct tagactgtat acacacaaac acatacacac 241 acacacacac acacacacac acacataaac ttatttgtac ttgtaatgtt ttaacttttg 301 ttatattttt agaccaaaga agaaaatgga aattgcggga agtatgggaa agtgatacca 361 gccggtgctg ttatatttgg gatggcagtc gagtgtgcag agatacgaag gcatcatagg 421 gttggtgcta aggacattgc tggtatacat ttaccaacaa atgtgaaatt tcagagccca 481 gcctatactt ctgttgatac agaagaaaca gttgaaccct acacaactga aaagatgagt 541 ggcatccccg gaggatacc //